Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g001180 Solanum pennellii HOM05D003562 ORTHO05D004074 9.6e-239 829.7 405 100.0
Solyc11g005180.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.0e-203 713.4 366 95.4
CAN.G557.9 Capsicum annuum HOM05D003562 ORTHO05D004074 1.3e-89 334.3 412 48.8
PGSC0003DMG400006062 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.2e-87 327.8 417 46.3
PGSC0003DMG400042505 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.2e-87 327.8 413 47.2
Sopen11g001240 Solanum pennellii HOM05D003562 ORTHO05D004074 1.3e-86 324.3 413 46.7
Solyc11g005230.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 2.9e-86 323.2 413 46.5
PGSC0003DMG400039163 Solanum tuberosum HOM05D003562 ORTHO05D004074 3.8e-86 322.8 416 46.2
PGSC0003DMG400006063 Solanum tuberosum HOM05D003562 ORTHO05D004074 2.3e-83 313.5 422 47.2
CAN.G557.10 Capsicum annuum HOM05D003562 ORTHO05D004074 1.5e-82 310.8 413 47.0
Nitab4.5_0004377g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 6.3e-81 305.4 431 44.8
Sopen11g001250 Solanum pennellii HOM05D003562 ORTHO05D004074 1.8e-80 303.9 422 46.4
Solyc11g005240.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.2e-79 301.2 422 46.0
Peaxi162Scf00025g02824 Petunia axillaris HOM05D003562 ORTHO05D004074 2.6e-79 300.1 425 44.0
Nitab4.5_0002396g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 3.5e-79 299.7 424 45.0
Peaxi162Scf00125g00231 Petunia axillaris HOM05D003562 ORTHO05D004074 1.0e-78 298.1 405 44.7
Solyc06g005930.3 Solanum lycopersicum HOM05D003562 ORTHO05D004074 2.1e-60 237.3 419 40.6
Nitab4.5_0002396g0050 Nicotiana tabacum HOM05D003562 ORTHO05D004074 9.8e-58 228.4 387 39.8
vmacro18374 Vaccinium macrocarpon HOM05D000884 ORTHO05D002127 8.9e-51 205.3 438 32.6
Rhsim08G0039700 Rhododendron simsii HOM05D000884 ORTHO05D002127 9.8e-50 201.8 434 33.9
Nitab4.5_0002396g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.4e-48 198.0 411 34.5
CAN.G341.6 Capsicum annuum HOM05D003562 ORTHO05D002248 2.0e-47 194.1 417 35.3
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 2.7e-47 193.7 442 32.8
MBI18_g45417_MAGBIO Magnolia biondii HOM05D003562 ORTHO05D004074 4.4e-42 176.4 402 32.1
Nitab4.5_0004377g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.3e-38 164.1 200 47.5
QL06p011807 Quercus lobata HOM05D003562 ORTHO05D004074 2.3e-38 164.1 411 30.9
Dinv02658 Davidia involucrata HOM05D003562 ORTHO05D004074 2.6e-34 150.6 399 30.6
Nitab4.5_0004377g0030 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.1e-29 135.2 154 47.4
PGSC0003DMG400006032 Solanum tuberosum HOM05D003562 ORTHO05D004074 4.3e-29 133.3 154 44.8
Cc01_g07880 Coffea canephora HOM05D003562 ORTHO05D004074 1.1e-27 128.6 232 34.5
CAN.G1074.6 Capsicum annuum HOM05D003562 ORTHO05D004074 2.4e-27 127.5 222 36.5
Aqoxy1G00347 Aquilegia oxysepala HOM05D003562 ORTHO05D004074 4.0e-27 126.7 221 34.8
CDE12G0865 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 4.0e-27 126.7 207 33.3
Duzib128G0310 Durio zibethinus HOM05D003562 ORTHO05D004074 4.0e-27 126.7 233 34.3
Gorai.011G213800 Gossypium raimondii HOM05D003562 ORTHO05D004074 4.0e-27 126.7 233 35.2
Gohir.D10G190150 Gossypium hirsutum HOM05D003562 ORTHO05D004074 6.8e-27 125.9 233 34.8
Gohir.D10G190200 Gossypium hirsutum HOM05D003562 ORTHO05D004074 6.8e-27 125.9 233 34.8
BcaB08g36248 Brassica carinata HOM05D003562 ORTHO05D004074 1.2e-26 125.2 223 34.5
Rhsim07G0066600 Rhododendron simsii HOM05D003562 ORTHO05D004074 1.2e-26 125.2 226 34.1
RhsimUnG0111400 Rhododendron simsii HOM05D003562 ORTHO05D004074 1.2e-26 125.2 226 34.1
Cc00_g22970 Coffea canephora HOM05D003562 ORTHO05D004074 1.5e-26 124.8 221 34.4
Gohir.D10G190700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 1.5e-26 124.8 233 34.8
AL8G36050 Arabidopsis lyrata HOM05D003562 ORTHO05D004074 2.6e-26 124.0 221 36.2
A02p07060 Brassica napus HOM05D003562 ORTHO05D004074 2.6e-26 124.0 228 34.2
BraA02t05786Z Brassica rapa HOM05D003562 ORTHO05D004074 2.6e-26 124.0 228 34.2
COL.COLO4_07204 Corchorus olitorius HOM05D003562 ORTHO05D004074 2.6e-26 124.0 233 33.5
Manes.04G160200 Manihot esculenta HOM05D003562 ORTHO05D004074 2.6e-26 124.0 227 32.2
THA.LOC104807160 Tarenaya hassleriana HOM05D003562 ORTHO05D004074 2.6e-26 124.0 215 34.0
vmacro13748 Vaccinium macrocarpon HOM05D003562 ORTHO05D004074 2.6e-26 124.0 224 33.9
Duzib114G0768 Durio zibethinus HOM05D003562 ORTHO05D004074 3.4e-26 123.6 234 33.8
BcaC04g19758 Brassica carinata HOM05D003562 ORTHO05D004074 5.8e-26 122.9 228 34.2
C09p51940 Brassica napus HOM05D003562 ORTHO05D004074 5.8e-26 122.9 228 34.2
BolC9t58057H Brassica oleracea HOM05D003562 ORTHO05D004074 5.8e-26 122.9 228 34.2
CANSAT35G1715 Cannabis sativa HOM05D003562 ORTHO05D004074 5.8e-26 122.9 219 34.2
A10p16750 Brassica napus HOM05D003562 ORTHO05D004074 9.9e-26 122.1 228 33.8
PSO384G3387 Papaver somniferum HOM05D003562 ORTHO05D004074 9.9e-26 122.1 222 35.1
ClCG01G007760 Citrullus lanatus HOM05D003562 ORTHO05D004074 1.3e-25 121.7 212 34.4
Hma1.2p1_1396F.1_g280630 Hydrangea macrophylla HOM05D003562 ORTHO05D004074 1.3e-25 121.7 215 34.0
BcaC03g14002 Brassica carinata HOM05D003562 ORTHO05D004074 1.7e-25 121.3 228 34.6
BolC2t07341H Brassica oleracea HOM05D003562 ORTHO05D004074 1.7e-25 121.3 228 34.6
MELO3C005120.2 Cucumis melo HOM05D003562 ORTHO05D004074 1.7e-25 121.3 215 35.3
Nn2g14890 Nelumbo nucifera HOM05D003562 ORTHO05D004074 1.7e-25 121.3 224 33.9
SalBow7G2199 Salvia bowleyana HOM05D003562 ORTHO05D004074 1.7e-25 121.3 222 33.8
Cpa.g.sc30.42 Carica papaya HOM05D003562 ORTHO05D004074 2.2e-25 120.9 225 34.2
CiPaw.13G012700 Carya illinoinensis HOM05D003562 ORTHO05D004074 2.2e-25 120.9 225 32.9
Thhalv10014282m.g Eutrema salsugineum HOM05D003562 ORTHO05D004074 2.2e-25 120.9 220 34.5
TAR636G0244 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.2e-25 120.9 218 32.1
BcaB05g22520 Brassica carinata HOM05D003562 ORTHO05D004074 2.9e-25 120.6 223 34.1
CsaV3_5G024840 Cucumis sativus L. HOM05D003562 ORTHO05D004074 2.9e-25 120.6 215 34.0
TAR636G2713 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.9e-25 120.6 220 32.7
ATR0763G113 Amborella trichopoda HOM05D003562 ORTHO05D004074 3.8e-25 120.2 222 36.0
Dinv09273 Davidia involucrata HOM05D003562 ORTHO05D004074 4.9e-25 119.8 213 33.3
CiPaw.14G007100 Carya illinoinensis HOM05D003562 ORTHO05D004074 6.4e-25 119.4 223 33.6
Sed0007359 Sechium edule HOM05D003562 ORTHO05D004074 6.4e-25 119.4 212 34.9
TAR636G1695 Trochodendron aralioides HOM05D003562 ORTHO05D004074 6.4e-25 119.4 218 32.1
MD06G1045900 Malus domestica HOM05D003562 ORTHO05D004074 8.4e-25 119.0 211 35.5
Sp6g21260 Schrenkiella parvula HOM05D003562 ORTHO05D004074 1.1e-24 118.6 223 33.6
Sc10g0004400 Simmondsia chinensis HOM05D003562 ORTHO05D004074 1.1e-24 118.6 209 33.0
TAR636G2742 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.1e-24 118.6 218 31.7
MD02G1270100 Malus domestica HOM05D003562 ORTHO05D004074 1.4e-24 118.2 224 33.9
Peaxi162Scf00025g00152 Petunia axillaris HOM05D003562 ORTHO05D004074 1.4e-24 118.2 223 34.5
AT5G59560 Arabidopsis thaliana HOM05D003562 ORTHO05D004074 1.9e-24 117.9 221 33.9
CSS0045780 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.9e-24 117.9 224 33.9
Ah.04g155210 Amaranthus hybridus HOM05D003562 ORTHO05D004074 2.4e-24 117.5 220 31.4
Lsat_1_v5_gn_6_15520 Lactuca sativa HOM05D003562 ORTHO05D004074 2.4e-24 117.5 220 34.1
Potri.003G198000 Populus trichocarpa HOM05D003562 ORTHO05D004074 2.4e-24 117.5 229 32.3
QL04p014940 Quercus lobata HOM05D003562 ORTHO05D004074 2.4e-24 117.5 225 33.3
CSS0041933 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 3.2e-24 117.1 225 33.3
Carub.0008s2023 Capsella rubella HOM05D003562 ORTHO05D004074 3.2e-24 117.1 221 34.8
QL04p014579 Quercus lobata HOM05D003562 ORTHO05D004074 3.2e-24 117.1 225 33.3
Thecc.10G162500 Theobroma cacao HOM05D003562 ORTHO05D004074 3.2e-24 117.1 233 31.3
Migut.N01839 Erythranthe guttata HOM05D003562 ORTHO05D004074 4.2e-24 116.7 222 32.9
Gohir.A10G183700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 5.4e-24 116.3 198 34.8
TAR636G1892 Trochodendron aralioides HOM05D003562 ORTHO05D004074 5.4e-24 116.3 205 32.7
Prupe.7G009600 Prunus persica HOM05D003562 ORTHO05D004074 7.1e-24 115.9 224 32.6
Sabra03G0147400 Salix brachista HOM05D003562 ORTHO05D004074 7.1e-24 115.9 229 31.9
C02p12410 Brassica napus HOM05D003562 ORTHO05D004074 9.2e-24 115.5 228 32.9
Potri.001G026700 Populus trichocarpa HOM05D003562 ORTHO05D004074 9.2e-24 115.5 228 32.0
Potri.T125306 Populus trichocarpa HOM05D003562 ORTHO05D004074 9.2e-24 115.5 229 31.9
SHI01272 Sapria himalayana HOM05D003562 ORTHO05D004074 9.2e-24 115.5 233 33.0
Cfa010886 Carpinus fangiana HOM05D003562 ORTHO05D004074 1.2e-23 115.2 209 33.5
Haze_03073 Corylus avellana HOM05D003562 ORTHO05D004074 1.2e-23 115.2 209 33.5
ECA233G2618 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-23 115.2 206 34.0
CSS0019906 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.6e-23 114.8 225 32.9
TWI32G0119 Tripterygium wilfordii HOM05D003562 ORTHO05D004074 1.6e-23 114.8 213 32.4
arahy.Tifrunner.gnm1.ann1.T72YSL Arachis hypogaea HOM05D003562 ORTHO05D004074 2.1e-23 114.4 220 31.8
BraA10t43756Z Brassica rapa HOM05D003562 ORTHO05D004074 2.1e-23 114.4 233 32.2
HanXRQChr12g0359541 Helianthus annuus HOM05D003562 ORTHO05D004074 2.1e-23 114.4 222 32.4
MSTRG.16988 Avicennia marina HOM05D003562 ORTHO05D004074 2.7e-23 114.0 219 33.8
Actinidia06246 Actinidia chinensis HOM05D003562 ORTHO05D004074 3.5e-23 113.6 184 32.6
Nitab4.5_0010864g0010 Nicotiana tabacum HOM05D003562 ORTHO05D004074 3.5e-23 113.6 165 38.8
GSVIVG01037424001 Vitis vinifera HOM05D003562 ORTHO05D004074 3.5e-23 113.6 218 32.6
DCAR_022850 Daucus carota HOM05D003562 ORTHO05D004074 7.8e-23 112.5 222 32.4
FvH4_5g25300 Fragaria vesca HOM05D003562 ORTHO05D004074 7.8e-23 112.5 214 33.6
FAN18G1494 Fragaria x ananassa HOM05D003562 ORTHO05D004074 7.8e-23 112.5 225 33.8
PGR142G2845 Punica granatum HOM05D003562 ORTHO05D004074 1.3e-22 111.7 218 31.7
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.7e-22 111.3 220 31.8
Lj3g0004154 Lotus japonicus HOM05D003562 ORTHO05D004074 1.7e-22 111.3 209 30.6
Solyc11g005260.2 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.7e-22 111.3 241 32.4
Sopen11g001270 Solanum pennellii HOM05D003562 ORTHO05D004074 1.7e-22 111.3 244 32.4
BcaB07g34157 Brassica carinata HOM05D003562 ORTHO05D004074 2.3e-22 110.9 223 32.7
CARHR273020 Cardamine hirsuta HOM05D003562 ORTHO05D004074 2.3e-22 110.9 233 32.2
Nitab4.5_0000320g0220 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.3e-22 110.9 221 34.4
Peaxi162Scf00128g00115 Petunia axillaris HOM05D003562 ORTHO05D004074 2.3e-22 110.9 207 34.3
Ah.04g155220 Amaranthus hybridus HOM05D003562 ORTHO05D004074 3.9e-22 110.2 222 31.5
FAN13G2751 Fragaria x ananassa HOM05D003562 ORTHO05D004074 3.9e-22 110.2 225 33.3
Lalb_Chr03g0032801 Lupinus albus HOM05D003562 ORTHO05D004074 6.6e-22 109.4 176 34.7
TPR.G17800 Trifolium pratense HOM05D003562 ORTHO05D004074 6.6e-22 109.4 223 31.4
Atru.chr12.1362 Acer truncatum HOM05D003562 ORTHO05D004074 1.1e-21 108.6 209 33.5
Ca_27897_v3 Cicer arietinum L. HOM05D003562 ORTHO05D004074 1.1e-21 108.6 211 28.9
Ciclev10029023m.g Citrus clementina HOM05D003562 ORTHO05D004074 1.1e-21 108.6 216 32.9
Lj8P275T68 Lonicera japonica HOM05D003562 ORTHO05D004074 1.1e-21 108.6 225 32.4
Oeu015695.4 Olea europaea HOM05D003562 ORTHO05D004074 1.5e-21 108.2 169 36.1
Eucgr.G03239 Eucalyptus grandis HOM05D003562 ORTHO05D004074 2.5e-21 107.5 219 32.0
HPP92_020694 Vanilla planifolia HOM05D003562 ORTHO05D004074 4.3e-21 106.7 418 25.4
PSO339G2283 Papaver somniferum HOM05D003562 ORTHO05D004074 5.6e-21 106.3 228 33.3
CDE01G0515 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 7.3e-21 105.9 176 33.0
Medtr3g017470 Medicago truncatula HOM05D003562 ORTHO05D004074 7.3e-21 105.9 211 29.9
VMungo1080G1790 Vigna mungo HOM05D003562 ORTHO05D004074 7.3e-21 105.9 209 28.7
FAN04G2150 Fragaria x ananassa HOM05D003562 ORTHO05D004074 9.6e-21 105.5 195 33.8
Psat5g217800 Pisum sativum HOM05D003562 ORTHO05D004074 9.6e-21 105.5 222 29.3
unitig_747.g21707 Utricularia gibba HOM05D003562 ORTHO05D004074 1.6e-20 104.8 224 32.1
SGA_v2.0_scaffold71G23983 Striga asiatica HOM05D003562 ORTHO05D004074 2.1e-20 104.4 221 29.9
Glyma.06G083300 Glycine max HOM05D003562 ORTHO05D004074 2.8e-20 104.0 218 29.8
Glyma.11G154000 Glycine max HOM05D003562 ORTHO05D004074 4.7e-20 103.2 218 29.8
Thecc.07G145200 Theobroma cacao HOM05D003562 ORTHO05D004074 4.7e-20 103.2 167 37.1
Phvul.005G028600 Phaseolus vulgaris HOM05D003562 ORTHO05D004074 6.2e-20 102.8 206 31.1
AUR62037195 Chenopodium quinoa HOM05D003562 ORTHO05D004074 4.0e-19 100.1 224 29.9
unitig_26.g9509 Utricularia gibba HOM05D003562 ORTHO05D004074 3.4e-18 97.1 170 32.9
ECA247G0148 Erigeron canadensis HOM05D003562 ORTHO05D004074 2.2e-17 94.4 150 33.3
Actinidia10167 Actinidia chinensis HOM05D003562 ORTHO05D004074 2.9e-17 94.0 112 39.3
Thecc.07G145100 Theobroma cacao HOM05D003562 ORTHO05D004074 2.9e-17 94.0 119 43.7
CANSAT11G2347 Cannabis sativa HOM05D003562 ORTHO05D004074 6.4e-17 92.8 172 33.1
HPP92_000641 Vanilla planifolia HOM05D003562 ORTHO05D004074 1.1e-16 92.0 213 30.0
HPP92_000706 Vanilla planifolia HOM05D003562 ORTHO05D004074 1.1e-16 92.0 171 35.7
Mapoly0008s0158 Marchantia polymorpha HOM05D003562 ORTHO05D004074 1.4e-16 91.7 172 31.4
PGSC0003DMG400006036 Solanum tuberosum HOM05D003562 ORTHO05D004074 3.2e-16 90.5 175 33.7
HPP92_020796 Vanilla planifolia HOM05D003562 ORTHO05D004074 9.3e-16 89.0 167 30.5
CSS0043492 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.6e-15 88.2 173 30.6
CANSAT11G2219 Cannabis sativa HOM05D003562 ORTHO05D004074 1.6e-15 88.2 159 33.3
Lsat_1_v5_gn_3_4941 Lactuca sativa HOM05D003562 ORTHO05D004074 6.0e-15 86.3 125 34.4
SEGI_35747 Sequoiadendron giganteum HOM05D003562 ORTHO05D004074 1.7e-14 84.7 180 28.3
Pp3c25_14670 Physcomitrium patens HOM05D003562 ORTHO05D004074 2.3e-14 84.3 182 31.9
BolC2t11811H Brassica oleracea HOM05D003562 ORTHO05D004074 3.9e-14 83.6 137 33.6
SMO164G0021 Selaginella moellendorffii HOM05D003562 ORTHO05D004074 1.1e-13 82.0 222 28.8
Lsat_1_v5_gn_4_44700 Lactuca sativa HOM05D003562 ORTHO05D004074 1.5e-13 81.6 122 32.8
PGSC0003DMG400006031 Solanum tuberosum HOM05D003562 ORTHO05D395926 1.5e-13 81.6 80 60.0
CANSAT01G2732 Cannabis sativa HOM05D003562 ORTHO05D004074 2.5e-13 80.9 112 39.3
TAR636G1190 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.5e-13 80.9 218 26.1
Pp3c12_13390 Physcomitrium patens HOM05D003562 ORTHO05D004074 7.3e-13 79.3 117 36.8
Ah.10g030580 Amaranthus hybridus HOM05D003562 ORTHO05D004074 1.6e-12 78.2 220 26.4
CDE01G0328 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 2.1e-12 77.8 213 29.6
CANSAT11G1241 Cannabis sativa HOM05D003562 ORTHO05D004074 2.8e-12 77.4 227 28.6
BraA02t08793Z Brassica rapa HOM05D003562 ORTHO05D004074 5.3e-11 73.2 133 32.3
CARHR266600 Cardamine hirsuta HOM05D003562 ORTHO05D004074 1.5e-10 71.6 135 34.1
AagrBONN_evm.TU.Sc2ySwM_362.1627 Anthoceros agrestis HOM05D003562 ORTHO05D004074 3.4e-10 70.5 110 32.7
BolC2t11816H Brassica oleracea HOM05D003562 ORTHO05D004074 4.5e-10 70.1 133 28.6
PRCOL_00000242 Prasinoderma coloniale HOM05D003562 ORTHO05D004074 2.9e-09 67.4 166 29.5
PGSC0003DMG400009785 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.9e-08 64.7 111 30.6
CDE12G0883 Ceratophyllum demersum HOM05D000824 ORTHO05D002221 4.2e-08 63.5 104 33.7
Zm00001eb188200 Zea mays HOM05D003562 ORTHO05D004074 9.3e-08 62.4 110 34.5
HanXRQChr06g0173441 Helianthus annuus HOM05D003562 ORTHO05D004074 2.1e-07 61.2 119 31.1
PGSC0003DMG400016924 Solanum tuberosum HOM05D003562 ORTHO05D051166 2.7e-07 60.8 71 50.7
Dinv33286 Davidia involucrata HOM05D003562 ORTHO05D004074 3.0e-06 57.4 337 24.0
Os05g0118000 Oryza sativa ssp. japonica HOM05D003562 ORTHO05D004074 3.0e-06 57.4 158 27.8
AUR62026879 Chenopodium quinoa HOM05D003562 ORTHO05D004074 6.7e-06 56.2 108 30.6


User provided reference genes

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