Gene: AT5G59560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G59560
  • Transcript Identifier AT5G59560.2
  • Gene Type Coding gene
  • Location Chr5 : 24000747-24001574 : negative

Gene Family Information

  • ID HOM05D003562
  • #Genes/#Species 192/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G59560.2
  • symbol SRR1
  • full_name SENSITIVITY TO RED LIGHT REDUCED 1
  • uniprot Q8GWZ6

Descriptions

  • Description sensitivity to red light reduced protein (SRR1)
  • Computational description SENSITIVITY TO RED LIGHT REDUCED 1 (SRR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, red, far-red light phototransduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sensitivity To Red Light Reduced-like, SRR1 (InterPro:IPR012942); Has 187 Blast hits to 182 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 13; Plants - 69; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
  • Computational description SENSITIVITY TO RED LIGHT REDUCED 1 (SRR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, red, far-red light phototransduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sensitivity To Red Light Reduced-like, SRR1 (InterPro:IPR012942); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007623
IMP
Gene Ontologycircadian rhythm1
GO:0009585
IEA
GOA Databasered, far-red light phototransduction
GO:0009585
IMP
Gene Ontologyred, far-red light phototransduction1
GO:0010017
IEA
GOA Databasered or far-red light signaling pathway
GO:0010017
IMP
Gene Ontologyred or far-red light signaling pathway1
GO:0042752
IMP
Gene Ontologyregulation of circadian rhythm1
GO:0007017
IBA
Gene Ontologymicrotubule-based process2
GO:0048511
IEA
GOA Databaserhythmic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 2
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
IBA
Gene Ontologycytoplasm1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR040044 SRR1-like protein
IPR012942 SRR1-like domain
Mapman id Description
35.1 not assigned.annotated