Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 6.4e-249 863.6 430 100.0
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 5.1e-230 800.8 430 94.9
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 7.6e-210 733.8 488 77.3
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 1.1e-205 719.9 496 74.8
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 4.5e-194 681.4 744 54.0
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.1e-184 650.2 454 73.3
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.1e-176 623.6 510 66.9
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 3.5e-170 602.1 393 77.4
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 7.0e-155 551.2 478 59.6
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 1.0e-150 537.3 469 59.5
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 1.0e-150 537.3 476 56.9
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 2.3e-150 536.2 478 57.5
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 5.4e-147 525.0 494 56.3
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.0e-142 510.8 473 54.8
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 1.9e-139 500.0 460 56.1
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 9.2e-139 497.7 479 53.4
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 4.7e-135 485.3 470 51.5
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 8.0e-135 484.6 476 51.7
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 8.0e-135 484.6 482 50.8
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 1.1e-134 484.2 443 54.6
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 4.0e-134 482.3 462 52.4
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 5.8e-133 478.4 438 54.3
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.3e-132 477.2 453 52.5
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.7e-132 476.9 494 51.0
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 4.9e-132 475.3 472 51.5
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 8.3e-132 474.6 481 52.2
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 1.1e-131 474.2 461 52.3
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 1.4e-131 473.8 431 55.0
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 4.1e-131 472.2 443 55.8
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 6.6e-129 464.9 476 50.8
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 8.6e-129 464.5 466 51.5
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 1.5e-128 463.8 483 50.7
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.9e-128 463.4 466 51.3
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 4.3e-128 462.2 471 50.1
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 2.8e-127 459.5 495 49.3
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 2.8e-127 459.5 362 62.2
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 8.1e-127 458.0 478 49.2
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 8.1e-127 458.0 437 54.0
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.8e-126 456.8 466 51.1
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 3.1e-126 456.1 433 53.1
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 5.2e-126 455.3 434 53.5
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 5.2e-126 455.3 436 53.2
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 7.5e-125 451.4 478 48.7
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 1.7e-124 450.3 437 52.4
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 3.7e-124 449.1 436 52.5
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 8.3e-124 448.0 335 64.5
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 1.1e-123 447.6 488 49.6
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 3.2e-123 446.0 487 47.8
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 1.6e-122 443.7 541 44.4
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 1.6e-122 443.7 541 44.5
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 1.0e-121 441.0 488 49.2
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 1.1e-120 437.6 539 44.7
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 7.3e-120 434.9 477 48.0
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 2.1e-119 433.3 536 43.1
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 8.1e-119 431.4 475 48.0
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 6.8e-118 428.3 431 50.1
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 8.9e-118 427.9 448 51.1
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 2.0e-117 426.8 431 49.9
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.6e-117 426.4 446 50.9
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 4.4e-117 425.6 622 40.8
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 5.8e-117 425.2 437 49.7
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 8.4e-116 421.4 467 47.1
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 3.2e-115 419.5 455 47.5
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 4.2e-115 419.1 431 49.9
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 2.7e-114 416.4 331 58.9
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 3.5e-114 416.0 448 49.3
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 4.6e-114 415.6 454 47.4
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 3.3e-112 409.5 434 49.5
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 3.3e-112 409.5 470 47.9
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 1.3e-111 407.5 435 49.4
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 1.1e-110 404.4 469 47.8
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 1.4e-110 404.1 469 47.5
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 3.1e-110 402.9 481 45.3
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 3.1e-110 402.9 427 50.1
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 4.0e-110 402.5 437 48.3
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.9e-108 396.4 519 41.8
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 3.2e-107 392.9 495 45.5
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 5.4e-107 392.1 494 45.3
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 2.3e-105 386.7 584 38.7
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 2.5e-104 383.3 474 43.9
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 3.3e-104 382.9 588 37.9
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 5.6e-104 382.1 268 64.6
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 7.3e-104 381.7 471 46.9
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 9.6e-104 381.3 435 45.7
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 9.6e-104 381.3 257 66.5
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 4.8e-103 379.0 588 38.1
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 8.1e-103 378.3 603 37.5
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.8e-102 377.1 453 45.7
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 2.4e-102 376.7 331 57.1
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 4.0e-102 375.9 484 44.4
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 4.0e-102 375.9 461 46.0
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 5.3e-102 375.6 481 43.7
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 9.0e-102 374.8 268 63.8
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 9.0e-102 374.8 243 68.3
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.6e-101 373.2 243 67.9
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 7.6e-101 371.7 434 47.9
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 2.2e-100 370.2 439 45.1
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 1.4e-99 367.5 340 51.5
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 5.4e-99 365.5 378 51.1
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 3.0e-97 359.8 470 42.3
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 6.7e-97 358.6 355 50.4
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 7.4e-96 355.1 380 50.3
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 8.1e-95 351.7 380 50.3
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 8.1e-95 351.7 408 48.0
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 1.1e-91 341.3 475 42.7
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 3.5e-90 336.3 367 51.0
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 3.0e-89 333.2 400 43.2
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.9e-89 332.8 462 44.4
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 3.7e-87 326.2 447 42.3
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 6.2e-87 325.5 432 42.6
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 2.4e-86 323.6 199 74.4
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 3.1e-86 323.2 597 36.2
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 9.0e-86 321.6 252 60.3
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 3.2e-83 313.2 273 57.9
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 5.5e-83 312.4 266 56.8
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 2.1e-82 310.5 439 43.1
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 6.5e-76 288.9 333 45.9
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 6.5e-76 288.9 427 39.6
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 1.1e-75 288.1 331 49.2
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 9.1e-70 268.5 345 44.1
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 1.9e-67 260.8 249 50.6
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 4.2e-67 259.6 487 34.9
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 2.7e-66 256.9 342 42.7
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.8e-65 254.2 346 41.3
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.1e-62 245.0 192 59.9
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.9e-57 226.5 237 51.1
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 8.8e-57 225.3 280 45.0
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.4e-49 201.4 133 67.7
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 1.4e-41 174.9 240 47.1
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 1.8e-38 164.5 184 43.5
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 2.4e-38 164.1 428 29.7
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 1.3e-36 158.3 183 45.9
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 1.7e-36 157.9 151 51.0
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 8.3e-31 139.0 224 39.7
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 2.4e-30 137.5 221 40.7
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 7.8e-29 132.5 159 47.8
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.3e-28 131.0 183 44.8
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 8.6e-20 102.4 118 43.2
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 2.3e-17 94.4 64 60.9
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 5.2e-17 93.2 69 53.6
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 8.9e-17 92.4 75 56.0
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 4.4e-16 90.1 74 54.1
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 4.9e-15 86.7 76 53.9
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.4e-14 84.3 81 50.6
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 4.1e-14 83.6 105 37.1
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.7e-13 80.9 78 50.0
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 7.3e-11 72.8 85 41.2
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.1e-09 68.9 176 31.2
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 5.8e-08 63.2 121 35.5
ATR0751G025 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.1e-06 58.9 60 43.3


User provided reference genes

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