Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 3.7e-143 511.5 257 100.0
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 2.9e-140 501.9 257 98.4
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 5.5e-123 444.5 226 97.8
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 6.8e-113 411.0 243 87.2
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 5.7e-112 407.9 227 89.0
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 3.7e-111 405.2 251 83.7
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 8.0e-98 360.9 231 82.3
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 1.1e-91 340.5 231 75.8
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.9e-91 339.7 234 74.4
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 3.6e-90 335.5 231 74.0
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 4.7e-90 335.1 237 73.8
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 4.7e-90 335.1 242 71.9
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 4.7e-90 335.1 237 72.6
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 5.2e-89 331.6 243 71.6
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 6.8e-89 331.3 223 76.7
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.5e-88 330.1 230 73.9
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 2.0e-88 329.7 243 72.0
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 2.0e-88 329.7 256 69.1
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 2.0e-88 329.7 231 75.3
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 2.6e-88 329.3 235 72.3
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 2.6e-88 329.3 184 85.3
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 4.4e-88 328.6 197 81.7
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 7.5e-88 327.8 231 75.8
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 1.3e-87 327.0 247 68.0
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 2.2e-87 326.2 240 70.8
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.9e-87 325.9 198 82.8
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 2.9e-87 325.9 227 74.4
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 3.7e-87 325.5 229 72.9
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 3.7e-87 325.5 237 70.0
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 3.7e-87 325.5 235 72.3
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 3.7e-87 325.5 235 73.2
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 4.9e-87 325.1 241 68.5
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 6.4e-87 324.7 236 71.2
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.4e-87 324.7 239 69.9
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 6.4e-87 324.7 186 83.9
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 6.4e-87 324.7 195 82.1
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 8.3e-87 324.3 234 71.8
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.1e-86 323.9 234 69.7
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.1e-86 323.9 234 71.4
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 1.4e-86 323.6 247 67.6
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 1.9e-86 323.2 228 73.7
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.4e-86 322.8 185 83.8
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 3.2e-86 322.4 166 91.0
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 5.4e-86 321.6 229 71.2
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 5.4e-86 321.6 240 71.2
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 7.0e-86 321.2 174 88.5
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 7.0e-86 321.2 236 70.8
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 9.2e-86 320.9 242 69.4
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 9.2e-86 320.9 188 83.0
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.2e-85 320.5 182 85.2
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.2e-85 320.5 181 85.1
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.2e-85 320.5 181 85.1
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.2e-85 320.5 181 86.2
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 1.6e-85 320.1 181 83.4
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 1.6e-85 320.1 227 71.8
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 1.6e-85 320.1 185 83.2
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 2.0e-85 319.7 235 71.1
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.0e-85 319.7 185 82.7
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 2.0e-85 319.7 181 84.0
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 2.7e-85 319.3 239 72.0
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 2.7e-85 319.3 237 72.2
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 3.5e-85 318.9 194 79.4
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 3.5e-85 318.9 241 69.7
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 4.6e-85 318.5 181 84.5
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 4.6e-85 318.5 239 70.3
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 6.0e-85 318.2 188 82.4
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 7.8e-85 317.8 238 69.3
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.0e-84 317.4 239 69.0
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 1.3e-84 317.0 247 68.4
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 1.3e-84 317.0 235 69.8
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.3e-84 317.0 196 78.6
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.7e-84 316.6 236 70.8
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 1.7e-84 316.6 216 75.5
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 2.3e-84 316.2 242 69.4
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 2.3e-84 316.2 236 70.3
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 3.0e-84 315.8 235 70.2
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 3.0e-84 315.8 222 74.3
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 3.0e-84 315.8 234 71.4
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 3.0e-84 315.8 227 70.9
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 3.9e-84 315.5 239 69.9
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 3.9e-84 315.5 228 70.6
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 5.0e-84 315.1 227 72.2
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 6.6e-84 314.7 238 69.7
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 1.1e-83 313.9 242 69.0
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.5e-83 312.8 177 85.3
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 2.5e-83 312.8 245 65.7
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 4.3e-83 312.0 240 68.8
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 4.3e-83 312.0 185 80.5
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 5.6e-83 311.6 232 70.7
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 9.5e-83 310.8 228 71.1
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 9.5e-83 310.8 228 71.1
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.6e-82 310.1 227 70.9
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.6e-82 310.1 234 68.4
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 2.1e-82 309.7 233 67.8
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 4.7e-82 308.5 218 72.0
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 6.2e-82 308.1 236 70.3
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 8.1e-82 307.8 178 83.1
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 1.4e-81 307.0 232 70.3
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 3.1e-81 305.8 216 70.8
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 3.1e-81 305.8 243 65.8
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 3.1e-81 305.8 234 66.2
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 6.8e-81 304.7 186 78.0
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 8.9e-81 304.3 173 83.2
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 1.3e-79 300.4 218 70.6
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 2.9e-79 299.3 239 65.7
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.7e-79 298.9 223 68.6
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 1.1e-78 297.4 180 79.4
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 7.3e-75 284.6 186 72.6
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 1.2e-74 283.9 233 64.4
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.2e-74 283.9 144 90.3
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 2.1e-74 283.1 277 58.8
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 7.1e-70 268.1 152 83.6
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 1.2e-69 267.3 174 72.4
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 7.8e-69 264.6 240 62.9
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.3e-68 263.1 226 65.9
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.1e-67 260.8 235 61.7
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 3.3e-67 259.2 180 66.7
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.6e-66 255.8 202 64.4
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 4.9e-63 245.4 166 68.1
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 8.7e-60 234.6 208 62.5
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 1.5e-56 223.8 122 87.7
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 7.4e-51 204.9 161 67.1
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 8.4e-47 191.4 158 63.9
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.1e-45 186.8 159 61.0
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.9e-43 180.3 112 79.5
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 3.3e-43 179.5 151 64.9
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 2.4e-41 173.3 149 62.4
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 3.4e-40 169.5 104 79.8
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 3.4e-40 169.5 152 61.2
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 4.5e-40 169.1 104 78.8
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.0e-32 143.7 78 91.0
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.3e-31 141.0 106 67.0
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 6.5e-31 138.7 78 87.2
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 4.2e-30 136.0 124 58.1
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 3.6e-29 132.9 75 89.3
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 4.6e-29 132.5 147 40.8
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 9.7e-27 124.8 71 88.7
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.5e-22 110.2 77 75.3
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 1.4e-17 94.4 88 56.8
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 4.1e-17 92.8 92 57.6
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.9e-15 86.7 49 79.6
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 7.4e-11 72.0 109 46.8
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.4e-09 67.0 42 73.8
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 5.3e-09 65.9 47 63.8
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 2.9e-07 60.1 28 85.7
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 2.9e-07 60.1 28 85.7


User provided reference genes

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