Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 9.2e-160 567.0 321 100.0
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.0e-154 549.3 321 96.9
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.4e-144 515.8 295 99.7
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 3.2e-144 515.4 326 90.2
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.3e-141 505.0 331 87.6
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 1.2e-130 470.3 322 85.4
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 4.5e-130 468.4 323 86.1
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 1.2e-127 460.3 323 83.9
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 2.3e-126 456.1 327 81.3
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.5e-125 453.4 332 80.1
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.1e-124 449.5 325 80.3
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.1e-124 449.5 325 80.3
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 2.4e-123 446.0 325 79.1
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 7.6e-122 441.0 322 79.5
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 4.9e-121 438.3 326 79.4
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 6.4e-121 438.0 331 77.9
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 8.4e-121 437.6 321 72.9
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.4e-120 436.8 325 78.8
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 5.5e-120 434.9 329 76.0
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 7.1e-120 434.5 334 76.0
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 9.3e-120 434.1 327 77.4
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 3.0e-118 429.1 326 77.9
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.5e-117 426.8 325 76.3
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.5e-117 426.0 317 78.2
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 4.3e-117 425.2 327 75.5
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 9.6e-117 424.1 328 75.0
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.3e-116 423.7 335 74.9
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.6e-116 423.3 306 83.7
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.1e-116 422.9 307 74.3
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 2.8e-116 422.5 325 76.0
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 3.7e-116 422.2 328 76.2
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 3.7e-116 422.2 328 76.2
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 6.2e-116 421.4 324 76.9
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 6.2e-116 421.4 326 75.2
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 8.2e-116 421.0 329 75.7
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 1.8e-115 419.9 330 74.8
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 1.8e-115 419.9 323 76.5
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 3.1e-115 419.1 322 77.0
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 3.1e-115 419.1 327 75.2
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 4.0e-115 418.7 276 86.2
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 9.0e-115 417.5 321 75.1
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 9.0e-115 417.5 341 73.0
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 1.5e-114 416.8 323 75.5
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 2.0e-114 416.4 328 74.7
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 3.4e-114 415.6 322 76.1
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 1.7e-113 413.3 326 74.5
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 2.2e-113 412.9 323 74.9
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 2.9e-113 412.5 321 75.1
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 4.9e-113 411.8 331 74.3
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 1.1e-112 410.6 329 75.7
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.1e-112 410.6 321 75.4
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.4e-112 410.2 331 75.2
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 1.9e-112 409.8 335 75.2
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 1.9e-112 409.8 313 77.0
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.5e-112 409.5 323 74.0
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 3.2e-112 409.1 325 74.2
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 4.2e-112 408.7 324 74.7
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 4.2e-112 408.7 323 75.9
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 4.2e-112 408.7 327 73.1
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 5.5e-112 408.3 329 74.2
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 9.3e-112 407.5 321 74.5
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 1.2e-111 407.1 326 74.8
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.2e-111 407.1 327 75.5
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.2e-111 407.1 322 75.2
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 1.6e-111 406.8 323 74.3
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.1e-111 406.4 326 75.5
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 3.5e-111 405.6 330 72.4
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.0e-110 404.1 327 75.2
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.0e-110 404.1 316 76.3
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 2.3e-110 402.9 325 74.2
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 1.1e-109 400.6 381 66.7
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.5e-109 400.2 329 70.2
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 1.9e-109 399.8 359 69.9
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 3.3e-109 399.1 326 72.1
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 4.3e-109 398.7 331 74.3
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 4.3e-109 398.7 325 72.6
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 9.7e-109 397.5 320 72.2
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.3e-108 397.1 323 72.8
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.6e-108 396.7 328 72.6
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.6e-108 396.7 322 72.0
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 1.6e-108 396.7 328 72.3
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 1.6e-108 396.7 323 74.0
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.6e-108 396.7 328 71.0
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 2.2e-108 396.4 332 73.8
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 2.8e-108 396.0 322 71.7
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 2.8e-108 396.0 323 72.8
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 2.8e-108 396.0 323 74.0
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 3.7e-108 395.6 322 71.7
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 3.7e-108 395.6 328 72.0
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 4.8e-108 395.2 323 72.4
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 4.8e-108 395.2 323 72.4
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 4.8e-108 395.2 323 72.4
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 4.8e-108 395.2 326 70.9
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 6.3e-108 394.8 326 72.1
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 8.2e-108 394.4 324 71.3
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 8.2e-108 394.4 319 74.3
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 1.1e-107 394.0 323 72.1
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 1.1e-107 394.0 323 72.1
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.1e-107 394.0 321 72.3
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 1.4e-107 393.7 335 70.1
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.8e-107 393.3 326 70.6
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.4e-107 392.9 331 72.8
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 3.1e-107 392.5 325 71.1
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 4.1e-107 392.1 325 72.0
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.1e-107 392.1 321 72.0
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 5.3e-107 391.7 324 72.5
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 6.9e-107 391.3 320 71.2
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 9.0e-107 391.0 335 69.3
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.2e-106 390.6 320 71.2
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.2e-106 390.6 320 71.2
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.0e-106 389.8 259 86.9
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.6e-106 389.4 326 72.7
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 3.4e-106 389.0 320 70.9
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 3.4e-106 389.0 320 70.9
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 5.9e-106 388.3 301 75.7
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 7.7e-106 387.9 260 77.3
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.0e-105 387.5 327 72.5
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 3.8e-105 385.6 317 72.2
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 3.8e-105 385.6 322 71.1
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 5.0e-105 385.2 318 71.7
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 5.0e-105 385.2 328 71.6
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 1.1e-104 384.0 327 71.6
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.4e-104 383.6 321 71.0
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.4e-104 383.6 327 71.6
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.9e-104 383.3 329 71.7
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 2.5e-104 382.9 356 68.5
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 5.5e-104 381.7 323 72.1
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 7.2e-104 381.3 261 85.8
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.2e-103 380.6 313 71.6
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 2.1e-103 379.8 308 74.7
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.7e-103 379.4 317 71.3
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 2.7e-103 379.4 277 78.0
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 2.7e-103 379.4 322 70.8
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 6.1e-103 378.3 299 74.6
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 7.9e-103 377.9 325 70.8
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 3.0e-102 375.9 324 70.1
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 3.0e-102 375.9 322 71.7
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.8e-99 366.7 273 75.5
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 5.9e-98 361.7 298 71.8
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 5.5e-96 355.1 320 68.4
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 3.0e-94 349.4 303 69.0
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 3.9e-94 349.0 314 68.8
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 9.1e-91 337.8 227 87.2
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.2e-90 337.4 231 85.7
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.5e-90 337.0 335 66.9
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.0e-90 336.7 231 83.5
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 4.2e-88 328.9 305 69.2
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.8e-86 323.6 323 63.2
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.8e-86 323.6 323 63.2
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 4.4e-85 318.9 277 68.6
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 4.5e-82 308.9 267 65.9
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.2e-79 300.8 234 79.1
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 5.2e-78 295.4 273 61.9
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 1.3e-76 290.8 252 61.1
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.7e-76 290.4 248 64.9
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 2.0e-74 283.5 247 74.9
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 3.5e-74 282.7 250 58.8
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 1.8e-70 270.4 196 81.6
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 8.8e-70 268.1 253 69.6
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.2e-69 267.7 236 74.2
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 9.5e-56 221.5 292 47.6
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 4.7e-55 219.2 262 46.2
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 5.2e-54 215.7 149 74.5
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 4.6e-50 202.6 149 72.5
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 7.8e-50 201.8 125 78.4
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 1.7e-49 200.7 192 71.4
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 5.8e-45 185.7 124 72.6
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.8e-39 166.8 139 64.0
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.2e-39 165.6 201 60.7
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 9.6e-32 141.7 100 75.0
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.8e-30 137.5 262 37.8
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 3.1e-30 136.7 96 71.9
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 5.2e-30 136.0 128 58.6
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 6.8e-30 135.6 108 74.1
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 2.5e-24 117.1 77 76.6
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 3.0e-17 93.6 83 81.9
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 3.9e-17 93.2 161 49.1
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 5.1e-17 92.8 107 65.4
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 3.1e-14 83.6 162 49.4
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 3.1e-14 83.6 157 41.4
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 9.6e-08 62.0 93 39.8
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 4.8e-07 59.7 36 86.1


User provided reference genes

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