Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1840.5 954 100.0
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1812.7 954 98.8
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1756.9 954 95.8
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1711.4 954 92.8
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1663.3 954 90.5
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1644.0 954 89.9
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1623.2 977 87.2
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1369.0 967 74.6
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1367.1 980 73.5
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1347.0 990 72.9
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1345.5 977 73.6
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1323.1 968 73.7
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1318.1 980 71.9
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1316.6 980 71.9
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1310.8 971 72.8
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1292.7 968 71.3
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1288.9 1012 69.0
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1285.8 990 70.5
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1282.3 1163 62.3
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1280.4 994 69.9
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1278.1 989 70.0
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1275.8 976 71.3
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1273.8 975 70.3
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1266.1 990 69.6
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1265.4 994 68.0
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1264.2 994 68.1
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1261.5 995 68.2
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1260.0 996 68.4
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1258.4 965 69.4
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1258.4 965 69.4
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1257.3 994 68.1
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1255.4 996 69.0
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1251.5 1050 65.3
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1249.6 1032 65.6
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1249.2 992 68.3
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1248.0 1031 65.7
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1248.0 1031 66.5
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1246.9 1034 64.9
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1243.4 1001 67.3
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1240.3 1071 65.2
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1235.7 1007 66.9
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1235.3 979 69.1
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1234.9 985 68.6
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1234.9 986 67.8
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1233.4 978 68.1
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1232.6 1024 65.3
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1232.6 1018 66.5
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1229.2 1048 65.8
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1228.4 969 69.0
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1225.7 972 67.6
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1225.7 973 67.9
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1224.9 1048 65.6
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1222.6 995 67.3
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1221.5 1040 66.4
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1220.7 996 66.2
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1219.1 1057 64.9
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1218.8 977 67.7
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1211.8 982 67.6
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1210.7 1044 65.3
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1209.5 963 67.7
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1209.5 986 66.4
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1206.0 966 67.3
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1206.0 966 67.3
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1204.9 966 67.3
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1203.3 966 67.0
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1202.6 966 66.6
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1199.5 963 67.1
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1198.7 966 66.9
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1198.3 970 66.8
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1196.0 970 66.9
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1196.0 985 66.9
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1193.3 968 66.7
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1192.6 974 66.7
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1192.2 967 67.3
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1191.0 972 66.3
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1186.0 984 66.9
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1176.4 970 65.5
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1176.0 993 63.5
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1164.4 827 75.7
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1162.9 846 73.4
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1141.3 983 64.3
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1121.7 990 60.0
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 0.0e+00 1107.4 971 64.0
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1096.3 911 66.0
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1093.2 1002 60.0
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 0.0e+00 1092.0 989 60.9
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 0.0e+00 1092.0 1002 60.7
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 0.0e+00 1082.0 955 64.5
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 2.9e-310 1068.5 821 69.9
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 2.4e-304 1048.9 885 66.9
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 8.5e-270 934.1 1019 51.4
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 7.2e-269 931.0 1071 49.9
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 4.2e-261 905.2 1058 49.5
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 1.0e-259 900.6 994 53.3
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 5.4e-256 888.3 983 51.0
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 1.9e-245 853.2 764 61.6
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 5.6e-245 851.7 713 66.3
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 6.8e-219 765.0 786 57.6
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 4.3e-213 745.7 917 49.6
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.7e-209 733.8 610 66.1
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 3.2e-208 729.6 596 67.8
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 4.6e-191 672.5 548 66.8
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 1.6e-180 637.5 620 60.2
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 2.1e-167 594.0 554 58.3
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 8.8e-158 562.0 963 35.5
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 2.3e-134 484.2 378 64.3
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 1.2e-130 471.9 396 62.1
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.8e-126 456.1 305 73.1
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 3.4e-125 453.8 972 34.0
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 8.3e-124 449.1 278 82.0
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 3.5e-122 443.7 269 84.0
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 5.6e-120 436.4 377 61.3
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.7e-116 424.9 277 78.7
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 8.6e-113 412.5 1307 28.8
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 1.9e-112 411.4 934 32.4
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 1.5e-109 401.7 297 68.7
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.3e-105 387.9 367 56.7
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 3.0e-97 360.9 352 53.1
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.6e-79 302.0 286 55.6
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 2.1e-79 301.6 184 80.4
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 2.0e-77 295.0 226 67.3
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.0e-69 268.5 176 73.9
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 2.9e-68 264.6 145 91.7
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.2e-67 261.2 241 58.9
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.9e-59 235.3 185 64.9
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.4e-59 233.0 144 77.8
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 6.1e-58 230.3 150 77.3
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.5e-53 215.7 194 59.8
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.4e-51 206.5 130 76.2
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.0e-48 198.7 130 73.8
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 3.7e-47 194.5 105 92.4
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 1.6e-45 189.1 221 54.3
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 3.5e-45 188.0 214 52.8
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.5e-45 188.0 131 71.0
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 1.3e-44 186.0 161 62.1
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 5.2e-41 174.1 98 86.7
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 6.5e-36 157.1 122 68.9
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.2e-35 154.8 101 73.3
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.2e-28 132.1 85 71.8
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 1.1e-27 129.8 208 42.3
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 6.1e-26 124.0 85 68.2
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 3.4e-24 118.2 139 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.8e-23 115.2 170 38.2
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 4.9e-15 87.8 42 97.6
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 4.7e-10 71.2 45 82.2
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 1.1e-06 60.1 59 47.5


User provided reference genes

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