Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 2.0e-113 412.5 216 100.0
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.7e-80 303.1 249 71.5
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.7e-80 303.1 249 71.5
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.7e-80 303.1 249 71.5
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.8e-80 302.4 253 70.8
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 5.4e-79 298.1 249 70.3
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.6e-78 296.6 246 70.7
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.3e-77 293.5 250 69.2
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 6.8e-74 281.2 249 66.3
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 3.4e-73 278.9 248 66.1
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 9.5e-68 260.8 251 61.4
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 9.5e-68 260.8 264 58.3
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 1.2e-67 260.4 229 65.1
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 1.0e-66 257.3 245 61.2
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 1.8e-66 256.5 257 59.5
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.3e-66 256.1 250 60.8
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.3e-66 256.1 229 64.6
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.3e-66 256.1 243 60.5
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.3e-66 256.1 229 64.6
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.3e-66 256.1 243 60.5
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 3.1e-66 255.8 247 62.8
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 4.0e-66 255.4 245 61.2
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 5.2e-66 255.0 251 61.0
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 5.2e-66 255.0 243 60.5
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 5.2e-66 255.0 256 59.0
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 6.8e-66 254.6 229 63.3
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.5e-65 253.4 248 61.3
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.5e-65 253.4 250 60.0
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 1.5e-65 253.4 248 61.7
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.5e-65 253.4 257 59.5
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 2.0e-65 253.1 248 61.3
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 2.6e-65 252.7 251 61.0
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 3.4e-65 252.3 246 61.8
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 5.8e-65 251.5 250 58.8
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 5.8e-65 251.5 241 61.4
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 7.5e-65 251.1 219 65.3
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 9.8e-65 250.8 247 60.7
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.7e-64 250.0 241 59.3
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 3.7e-64 248.8 233 62.2
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 3.7e-64 248.8 251 59.4
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 6.4e-64 248.1 226 62.8
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 6.4e-64 248.1 231 62.8
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.1e-63 247.3 243 60.1
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 1.1e-63 247.3 251 59.4
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 1.1e-63 247.3 216 66.7
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.4e-63 246.1 265 56.2
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 3.2e-63 245.7 255 57.6
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 3.2e-63 245.7 250 59.6
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 5.4e-63 245.0 261 57.5
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 5.4e-63 245.0 250 59.6
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.2e-62 243.8 253 58.9
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 1.2e-62 243.8 248 60.1
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.2e-62 243.8 265 55.8
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 2.0e-62 243.0 245 57.1
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 3.5e-62 242.3 236 59.7
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 4.6e-62 241.9 239 59.4
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 6.0e-62 241.5 252 57.5
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.7e-61 240.0 249 56.2
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 3.0e-61 239.2 250 56.0
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 5.0e-61 238.4 211 64.5
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.1e-60 237.3 249 56.2
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.1e-60 237.3 249 56.2
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.1e-60 237.3 249 56.2
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 1.1e-60 237.3 254 57.5
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.5e-60 236.9 250 57.2
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 1.5e-60 236.9 249 56.2
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.3e-60 235.7 253 56.9
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 4.3e-60 235.3 229 59.0
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 7.3e-60 234.6 250 56.8
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 9.5e-60 234.2 253 56.1
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.2e-59 233.8 247 57.1
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 1.2e-59 233.8 235 59.1
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 1.6e-59 233.4 253 57.7
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.1e-59 233.0 255 56.5
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 3.6e-59 232.3 219 62.1
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 3.6e-59 232.3 219 61.6
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 3.6e-59 232.3 219 62.1
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 3.6e-59 232.3 219 62.1
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 3.6e-59 232.3 219 61.6
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 4.7e-59 231.9 219 60.7
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 6.2e-59 231.5 245 55.9
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 8.1e-59 231.1 250 56.0
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.1e-58 230.7 221 60.6
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 1.1e-58 230.7 249 57.4
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 1.4e-58 230.3 244 57.4
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 1.4e-58 230.3 244 57.4
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.4e-58 230.3 172 73.8
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 1.8e-58 229.9 221 60.2
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 2.3e-58 229.6 219 61.2
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.1e-58 229.2 218 62.4
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 5.2e-58 228.4 219 60.7
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 6.8e-58 228.0 219 60.7
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 1.2e-57 227.3 219 60.3
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 1.2e-57 227.3 260 53.8
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.2e-57 227.3 249 55.0
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.5e-57 226.9 246 56.5
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 2.0e-57 226.5 251 55.0
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 3.4e-57 225.7 263 53.2
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 4.4e-57 225.3 242 55.0
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 7.5e-57 224.6 246 56.1
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 9.8e-57 224.2 286 50.7
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 1.7e-56 223.4 253 55.3
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 2.9e-56 222.6 205 62.0
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 2.9e-56 222.6 245 57.6
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 2.9e-56 222.6 242 56.2
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.1e-54 216.5 211 64.5
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 2.7e-54 216.1 247 54.3
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 3.5e-54 215.7 217 57.1
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.1e-52 210.7 213 57.7
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 7.3e-52 208.0 256 52.7
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 4.7e-51 205.3 205 59.5
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 6.2e-51 204.9 207 62.8
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 8.1e-51 204.5 242 52.1
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 8.9e-50 201.1 245 48.2
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.5e-49 200.3 258 47.7
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 1.4e-47 193.7 185 64.9
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 9.2e-47 191.0 229 53.7
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 6.0e-46 188.3 220 50.5
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 9.6e-44 181.0 187 56.7
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 1.2e-43 180.6 224 47.8
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 3.1e-42 176.0 260 44.2
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 3.9e-37 159.1 191 51.8
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 1.1e-34 151.0 99 79.8
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 5.3e-34 148.7 163 58.9
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.5e-33 147.1 204 46.6
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.5e-33 145.6 95 78.9
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 4.6e-30 135.6 96 77.1
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.8e-29 133.7 93 77.4
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.8e-29 133.7 226 38.5
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 1.3e-24 117.5 155 51.0
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.4e-23 114.0 90 67.8
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.8e-21 107.1 97 64.9
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 3.0e-21 106.3 256 34.4
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 3.3e-20 102.8 152 46.1
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.8e-19 99.8 95 61.1
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 1.1e-18 97.8 105 49.5
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 7.6e-17 91.7 176 39.2
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 2.9e-16 89.7 122 45.1
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 1.1e-15 87.8 242 32.2
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.5e-15 86.7 94 59.6
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.2e-14 84.3 104 50.0
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.2e-14 84.3 104 50.0
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.6e-14 84.0 63 71.4
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.9e-07 60.5 62 56.5
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 5.5e-07 58.9 57 61.4
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 7.9e-06 55.1 76 50.0


User provided reference genes

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