Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 5.4e-160 567.8 319 100.0
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.6e-154 548.9 320 97.2
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 1.7e-145 519.6 320 91.9
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 6.0e-143 511.1 326 88.3
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.5e-141 506.5 297 98.3
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.6e-135 485.0 332 85.8
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 1.1e-133 480.3 327 85.9
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 1.6e-132 476.5 322 85.4
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.3e-131 472.6 322 84.5
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.5e-130 469.9 307 80.5
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 9.6e-125 450.7 324 80.9
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.7e-124 448.4 328 79.9
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 8.1e-124 447.6 328 78.0
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 5.2e-123 444.9 327 79.8
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 6.8e-123 444.5 328 77.4
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.2e-122 443.7 332 78.3
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 1.5e-122 443.4 324 80.2
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 2.0e-122 443.0 324 78.4
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 4.4e-122 441.8 335 77.3
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.7e-121 439.9 316 80.4
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 2.9e-121 439.1 325 79.7
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.9e-121 438.3 328 76.8
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 6.4e-121 438.0 321 78.8
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.9e-120 436.4 281 87.2
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 3.2e-120 435.6 334 75.4
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 5.4e-120 434.9 326 77.3
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 5.4e-120 434.9 296 86.5
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 5.4e-120 434.9 319 78.1
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 1.6e-119 433.3 325 76.0
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.6e-119 433.3 327 77.1
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 3.5e-119 432.2 320 76.9
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 4.6e-119 431.8 327 76.5
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 4.6e-119 431.8 327 76.8
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 7.8e-119 431.0 327 75.2
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 3.9e-118 428.7 322 78.3
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 6.6e-118 427.9 328 74.1
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 8.7e-118 427.6 324 77.2
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 8.7e-118 427.6 324 78.1
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 8.7e-118 427.6 343 74.3
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.1e-117 427.2 319 77.4
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 1.1e-117 427.2 327 75.2
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.9e-117 426.4 322 77.0
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 3.3e-117 425.6 333 76.3
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 5.6e-117 424.9 319 76.5
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 5.6e-117 424.9 322 77.6
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.3e-116 423.7 322 77.3
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.3e-116 423.7 325 76.3
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.1e-116 422.9 324 76.9
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 2.8e-116 422.5 322 77.0
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 3.6e-116 422.2 327 75.2
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.6e-116 422.2 260 83.5
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 3.6e-116 422.2 325 76.0
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 4.8e-116 421.8 290 82.8
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 6.2e-116 421.4 322 78.0
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 8.1e-116 421.0 357 70.9
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 2.4e-115 419.5 325 73.8
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 5.3e-115 418.3 330 73.9
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 6.9e-115 417.9 320 74.4
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 6.9e-115 417.9 322 76.7
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 9.0e-115 417.5 324 73.1
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.2e-114 417.2 325 74.5
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 1.5e-114 416.8 329 75.7
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 2.0e-114 416.4 322 75.5
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 2.6e-114 416.0 323 75.5
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 3.4e-114 415.6 328 75.3
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 4.4e-114 415.2 327 76.8
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 7.6e-114 414.5 383 67.6
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 1.3e-113 413.7 328 75.3
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.2e-113 412.9 327 76.5
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 3.8e-113 412.1 325 73.2
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 4.9e-113 411.8 334 72.5
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 4.9e-113 411.8 317 77.0
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 6.4e-113 411.4 322 70.2
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 8.4e-113 411.0 329 74.8
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 8.4e-113 411.0 289 83.4
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 1.1e-112 410.6 323 75.2
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 1.1e-112 410.6 323 75.2
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 1.1e-112 410.6 325 74.2
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 1.4e-112 410.2 323 75.2
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 3.2e-112 409.1 333 72.4
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 4.2e-112 408.7 290 82.4
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 4.2e-112 408.7 323 75.2
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 4.2e-112 408.7 323 75.2
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 4.2e-112 408.7 328 73.2
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 7.1e-112 407.9 326 74.2
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 7.1e-112 407.9 321 74.5
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 9.3e-112 407.5 328 74.1
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 1.2e-111 407.1 324 74.7
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 1.2e-111 407.1 325 73.8
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 1.6e-111 406.8 326 73.6
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 2.7e-111 406.0 314 76.8
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 2.7e-111 406.0 326 73.9
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 3.5e-111 405.6 319 74.9
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 7.9e-111 404.4 327 73.7
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.0e-110 404.1 332 74.4
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.0e-110 404.1 330 74.2
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.3e-110 403.7 319 74.6
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 1.3e-110 403.7 312 75.0
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.0e-110 402.5 259 88.0
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 5.1e-110 401.7 321 73.2
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 6.6e-110 401.4 331 72.5
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 8.7e-110 401.0 329 71.1
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 1.9e-109 399.8 296 78.0
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.5e-109 399.4 311 75.2
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 2.5e-109 399.4 323 73.4
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 4.3e-109 398.7 324 73.5
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 5.6e-109 398.3 326 72.1
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 9.6e-109 397.5 328 72.6
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.3e-108 397.1 327 73.1
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 2.8e-108 396.0 326 71.2
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 2.8e-108 396.0 325 73.2
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 3.6e-108 395.6 323 72.1
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 4.8e-108 395.2 326 73.0
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 6.2e-108 394.8 319 71.8
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 6.2e-108 394.8 326 73.0
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 6.2e-108 394.8 328 72.6
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 6.2e-108 394.8 323 74.3
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.1e-107 394.0 313 73.2
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 2.4e-107 392.9 323 71.5
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 4.0e-107 392.1 323 71.5
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.0e-107 392.1 299 75.3
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 9.0e-107 391.0 315 72.4
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 9.0e-107 391.0 324 71.9
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.5e-106 390.2 313 73.2
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 4.9e-105 385.2 317 71.9
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 6.4e-105 384.8 322 72.4
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.4e-104 383.6 322 71.1
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 2.4e-104 382.9 322 71.1
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 2.4e-104 382.9 322 71.1
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 2.4e-104 382.9 261 86.2
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 4.2e-104 382.1 277 78.3
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 5.4e-104 381.7 322 71.1
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 5.4e-104 381.7 322 71.1
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 9.3e-104 380.9 307 73.9
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 2.7e-103 379.4 324 70.4
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 4.6e-103 378.6 328 69.8
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 8.7e-102 374.4 273 77.7
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 4.8e-100 368.6 313 70.9
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 2.0e-98 363.2 299 72.6
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.7e-97 360.1 320 68.8
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 1.6e-95 353.6 356 65.2
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 1.3e-94 350.5 281 73.0
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.3e-93 345.9 227 89.4
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 9.6e-93 344.4 333 67.0
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 1.3e-92 344.0 303 71.0
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.4e-91 340.5 231 85.7
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.6e-90 336.3 231 83.1
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 6.5e-89 331.6 323 62.8
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 6.5e-89 331.6 323 62.8
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.1e-88 330.9 274 70.1
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 3.7e-84 315.8 267 65.9
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 8.5e-81 304.7 273 63.4
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.6e-79 300.4 217 82.9
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 6.1e-79 298.5 248 64.9
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 1.4e-78 297.4 252 61.5
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 2.3e-78 296.6 250 62.0
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 5.9e-74 282.0 246 74.4
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.2e-71 274.2 256 70.3
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 1.6e-71 273.9 196 82.7
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.3e-70 270.0 235 73.6
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 2.4e-59 233.4 262 48.9
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 1.7e-57 227.3 260 52.7
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 7.2e-56 221.9 147 75.5
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.6e-53 213.4 125 83.2
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 4.8e-52 209.1 191 73.3
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 4.5e-50 202.6 147 72.8
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.2e-47 194.5 124 75.8
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.6e-41 172.2 165 70.9
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 9.5e-40 168.3 137 66.4
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 1.3e-33 147.9 100 78.0
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.5e-32 143.7 262 38.9
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.4e-30 137.9 96 69.8
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 2.3e-30 137.1 88 75.0
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 2.0e-29 134.0 108 73.1
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 6.2e-23 112.5 91 68.1
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 1.3e-17 94.7 145 51.7
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 5.1e-17 92.8 83 81.9
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 5.1e-17 92.8 107 65.4
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 4.3e-16 89.7 146 52.7
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 1.1e-14 85.1 122 45.9
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 1.4e-11 74.7 93 46.2
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 2.4e-06 57.4 81 33.3


User provided reference genes

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