Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.1e-201 706.4 366 100.0
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 9.4e-201 703.4 366 99.5
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 4.4e-198 694.5 366 98.1
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 4.0e-191 671.4 366 94.5
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 7.0e-188 660.6 366 92.3
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.0e-183 645.2 358 91.9
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.7e-179 632.1 393 84.5
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 9.1e-172 607.1 357 87.7
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.7e-171 604.0 357 86.8
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 8.9e-167 590.5 398 80.7
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 3.0e-162 575.5 361 80.9
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 9.5e-161 570.5 360 81.4
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.8e-159 566.2 351 81.8
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 2.6e-158 562.4 355 80.8
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 2.6e-158 562.4 356 80.3
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 3.4e-158 562.0 356 81.2
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 2.9e-157 558.9 356 79.5
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 4.9e-157 558.1 371 79.0
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 4.9e-157 558.1 360 79.7
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 8.3e-157 557.4 356 80.3
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.9e-156 556.2 355 82.0
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.9e-156 556.2 357 81.2
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 2.4e-156 555.8 353 81.0
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 2.4e-156 555.8 358 81.3
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.2e-156 555.4 355 78.6
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 4.1e-156 555.1 362 80.1
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 5.4e-156 554.7 354 79.7
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 9.2e-156 553.9 362 80.1
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 9.2e-156 553.9 361 79.2
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 2.7e-155 552.4 358 79.3
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.5e-155 552.0 359 78.6
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 3.5e-155 552.0 357 80.4
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 7.8e-155 550.8 347 81.6
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 7.8e-155 550.8 345 82.0
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 1.3e-154 550.1 357 79.8
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 2.3e-154 549.3 358 77.7
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 3.0e-154 548.9 355 78.3
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.9e-154 548.5 353 79.9
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 6.6e-154 547.7 326 84.7
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 6.6e-154 547.7 325 84.0
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 8.6e-154 547.4 370 78.1
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 8.6e-154 547.4 352 80.4
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.1e-153 547.0 361 78.7
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 1.1e-153 547.0 330 84.2
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.5e-153 545.8 356 76.7
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.5e-153 545.8 356 76.7
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 3.3e-153 545.4 352 79.3
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 3.3e-153 545.4 353 80.2
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 4.3e-153 545.0 326 84.4
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 4.3e-153 545.0 326 85.0
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 5.6e-153 544.7 371 76.5
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 5.6e-153 544.7 351 80.9
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 3.6e-152 542.0 357 77.0
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 3.6e-152 542.0 326 84.4
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.6e-152 542.0 352 79.3
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 6.2e-152 541.2 353 77.6
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 6.2e-152 541.2 333 82.3
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 6.2e-152 541.2 365 78.4
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 8.1e-152 540.8 358 79.9
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 8.1e-152 540.8 358 78.8
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.1e-152 540.8 358 78.8
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.4e-151 540.0 359 77.4
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.8e-151 539.7 345 80.6
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 2.3e-151 539.3 347 80.4
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 2.3e-151 539.3 358 78.2
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 5.2e-151 538.1 327 82.9
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 6.8e-151 537.7 332 81.9
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 6.8e-151 537.7 326 84.0
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.0e-150 536.2 371 74.9
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.0e-150 536.2 332 81.6
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 2.0e-150 536.2 369 77.0
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.4e-150 535.4 350 78.6
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.4e-150 535.0 350 78.3
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.8e-150 534.6 359 78.0
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.8e-150 534.6 332 81.3
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 5.8e-150 534.6 346 79.8
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 9.8e-150 533.9 358 76.5
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.7e-149 533.1 369 75.6
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 2.9e-149 532.3 361 76.2
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 3.7e-149 531.9 364 76.6
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 4.9e-149 531.6 361 77.0
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 4.9e-149 531.6 375 74.1
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 6.4e-149 531.2 358 77.7
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 6.4e-149 531.2 322 82.9
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.1e-148 530.4 316 84.2
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 1.4e-148 530.0 361 76.7
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 1.4e-148 530.0 352 78.1
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 1.9e-148 529.6 358 77.4
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 2.4e-148 529.3 317 84.5
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 5.4e-148 528.1 358 77.4
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 5.4e-148 528.1 363 75.8
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 5.4e-148 528.1 323 80.8
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 9.2e-148 527.3 363 76.3
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 9.2e-148 527.3 361 76.2
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 9.2e-148 527.3 332 80.7
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 2.7e-147 525.8 359 76.6
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 3.5e-147 525.4 361 75.6
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 3.5e-147 525.4 361 75.6
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 4.6e-147 525.0 364 75.5
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 4.6e-147 525.0 367 75.7
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 6.0e-147 524.6 331 78.9
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 6.0e-147 524.6 363 76.0
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 6.0e-147 524.6 355 76.6
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.0e-146 523.9 358 77.4
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.0e-146 523.9 358 77.4
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.3e-146 523.5 351 76.1
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 2.3e-146 522.7 363 76.0
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 3.0e-146 522.3 352 75.6
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 3.9e-146 521.9 356 77.0
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 3.9e-146 521.9 356 77.0
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.9e-146 521.9 356 75.3
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 3.9e-146 521.9 353 74.2
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 8.6e-146 520.8 355 76.6
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 8.6e-146 520.8 356 76.7
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 8.6e-146 520.8 355 76.6
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 8.6e-146 520.8 353 75.4
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 8.6e-146 520.8 431 65.7
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.1e-145 520.4 355 76.3
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.9e-145 519.6 362 74.6
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.9e-145 519.6 351 75.8
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 3.3e-145 518.8 353 74.8
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.3e-145 518.5 360 74.2
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 7.3e-145 517.7 430 66.5
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.2e-144 516.9 332 79.2
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.3e-143 512.7 371 72.2
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.3e-143 512.7 316 82.3
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 8.9e-143 510.8 359 74.4
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.5e-142 510.0 357 74.8
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.4e-142 508.4 324 79.6
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.9e-142 507.3 301 84.4
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 2.2e-141 506.1 416 66.6
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 5.4e-140 501.5 287 86.8
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.9e-137 493.0 344 76.2
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.8e-136 489.2 287 85.4
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 6.8e-135 484.6 330 73.9
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 8.9e-135 484.2 335 72.5
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.2e-134 483.8 361 71.5
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 7.1e-132 474.6 363 71.1
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.7e-131 472.6 312 77.6
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.3e-130 470.3 328 72.9
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.5e-129 466.8 312 75.0
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 9.6e-129 464.2 336 71.4
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 6.2e-128 461.5 324 71.3
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 4.0e-127 458.8 299 77.6
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 2.6e-126 456.1 339 69.6
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 4.4e-126 455.3 311 74.3
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 3.8e-125 452.2 299 74.6
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.6e-118 429.5 297 72.1
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.3e-112 410.6 253 84.2
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 3.7e-112 409.1 250 83.2
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 9.3e-108 394.4 321 63.2
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 4.3e-105 385.6 255 79.6
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.3e-98 364.0 289 63.3
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 2.7e-91 339.7 228 77.2
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 6.1e-75 285.4 192 76.6
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.4e-74 284.3 269 60.6
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 3.1e-71 273.1 192 75.0
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.1e-68 264.6 308 50.3
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.8e-63 247.3 358 45.0
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 3.4e-49 199.9 112 84.8
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 8.6e-45 185.3 113 82.3
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 2.2e-40 170.6 199 54.3
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 2.2e-40 170.6 199 54.3
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 2.4e-39 167.2 189 55.6
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 1.8e-34 151.0 301 33.6
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 9.8e-33 145.2 104 66.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 2.9e-32 143.7 102 67.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 2.9e-32 143.7 102 67.6
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.9e-31 141.0 102 66.7
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 1.6e-30 137.9 106 63.2
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 7.8e-30 135.6 98 65.3
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.7e-29 134.4 107 60.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 7.3e-28 129.0 106 58.5
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 1.8e-18 97.8 67 77.6
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 3.4e-17 93.6 64 67.2
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 4.4e-17 93.2 49 93.9
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 9.3e-15 85.5 61 75.4
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 2.0e-09 67.8 38 76.3
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 2.2e-08 64.3 38 73.7


User provided reference genes

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