Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 3.4e-161 571.6 291 100.0
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.0e-141 506.9 299 88.0
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.2e-129 466.8 313 79.6
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.6e-129 465.7 313 79.9
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 2.6e-129 465.7 313 79.9
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 7.6e-129 464.2 313 78.3
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 8.7e-125 450.7 313 76.7
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 3.8e-120 435.3 310 74.2
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.1e-119 433.7 313 75.4
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 6.9e-114 414.5 315 70.5
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 7.7e-113 411.0 312 68.6
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 8.5e-112 407.5 309 69.3
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 1.1e-111 407.1 318 67.6
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 3.2e-111 405.6 318 67.3
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 3.2e-111 405.6 317 67.5
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 9.4e-111 404.1 311 68.2
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 1.2e-110 403.7 309 69.9
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 4.6e-110 401.7 309 68.3
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 4.6e-110 401.7 305 68.9
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 6.1e-110 401.4 312 67.3
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 1.0e-109 400.6 311 69.1
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.4e-109 400.2 312 67.3
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 1.4e-109 400.2 311 66.9
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 3.9e-109 398.7 296 69.9
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 8.8e-109 397.5 310 68.4
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 8.8e-109 397.5 317 65.9
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 2.0e-108 396.4 309 67.3
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 2.5e-108 396.0 318 66.4
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 3.3e-108 395.6 313 67.7
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.3e-108 395.2 310 68.4
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 4.3e-108 395.2 310 68.4
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 5.7e-108 394.8 310 66.8
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 5.7e-108 394.8 310 67.4
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 5.7e-108 394.8 310 67.4
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 5.7e-108 394.8 311 65.6
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 9.7e-108 394.0 308 67.5
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 9.7e-108 394.0 311 66.9
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 2.2e-107 392.9 310 67.1
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.8e-107 392.5 310 67.7
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 3.7e-107 392.1 312 67.0
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.8e-107 391.7 311 67.2
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 4.8e-107 391.7 311 65.9
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 6.3e-107 391.3 313 67.4
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.1e-106 390.6 310 68.4
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.1e-106 390.6 313 64.2
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.1e-106 390.6 313 64.2
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.1e-106 390.6 310 66.8
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.8e-106 389.8 314 66.2
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.4e-106 389.4 309 66.3
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.4e-106 389.4 314 65.3
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 3.1e-106 389.0 321 64.8
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 3.1e-106 389.0 306 68.3
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 5.3e-106 388.3 313 65.2
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 9.1e-106 387.5 295 68.5
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 1.2e-105 387.1 304 66.1
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.5e-105 386.7 310 65.8
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 1.5e-105 386.7 312 66.0
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 1.5e-105 386.7 304 66.1
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.0e-105 386.3 313 64.2
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 2.6e-105 386.0 315 64.1
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.6e-105 386.0 315 64.8
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 2.6e-105 386.0 308 66.2
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 2.6e-105 386.0 308 66.2
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 3.4e-105 385.6 319 65.5
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 5.9e-105 384.8 300 67.7
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 5.9e-105 384.8 300 67.7
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 5.9e-105 384.8 300 67.7
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 5.9e-105 384.8 309 66.3
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 5.9e-105 384.8 313 63.3
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 7.7e-105 384.4 308 66.2
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 7.7e-105 384.4 316 64.2
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 2.2e-104 382.9 309 66.0
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.2e-104 382.9 313 63.9
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 5.0e-104 381.7 314 63.7
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 8.5e-104 380.9 309 63.8
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 8.5e-104 380.9 304 65.5
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.4e-103 380.2 300 66.7
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.4e-103 380.2 300 66.7
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.4e-103 380.2 300 66.7
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 3.2e-103 379.0 311 65.0
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 4.2e-103 378.6 310 65.2
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 4.2e-103 378.6 316 63.0
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 5.5e-103 378.3 301 66.8
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 2.1e-102 376.3 317 62.5
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 2.7e-102 375.9 350 60.0
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 4.7e-102 375.2 316 63.6
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 7.9e-102 374.4 313 65.5
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.4e-101 373.6 314 63.4
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 5.1e-101 371.7 310 63.5
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 5.1e-101 371.7 315 64.1
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.0e-100 369.8 348 58.0
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 4.4e-100 368.6 313 62.3
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 4.4e-100 368.6 305 64.3
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 7.7e-97 357.8 247 76.5
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.7e-96 356.7 306 61.8
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 1.1e-95 354.0 290 65.2
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 2.7e-94 349.4 335 59.1
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 6.1e-94 348.2 273 67.0
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.3e-92 342.4 219 77.6
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 4.4e-92 342.0 330 57.6
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.4e-90 336.3 343 52.5
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.6e-89 333.6 247 72.5
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.0e-89 333.2 242 70.7
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.0e-89 333.2 275 65.5
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 3.5e-89 332.4 340 55.0
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 7.2e-87 324.7 204 79.4
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.5e-84 317.0 295 55.9
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 2.0e-84 316.6 212 75.5
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 3.7e-83 312.4 291 62.5
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 4.8e-83 312.0 318 52.8
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 7.0e-82 308.1 246 67.1
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.7e-80 303.5 311 57.2
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 2.9e-80 302.8 291 57.7
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.2e-79 298.9 269 59.5
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 9.4e-79 297.7 279 57.3
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 2.3e-77 293.1 295 54.2
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 5.7e-76 288.5 295 53.2
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 9.1e-74 281.2 249 66.3
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 2.0e-73 280.0 186 75.8
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 3.0e-69 266.2 193 76.7
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.2e-65 254.2 192 76.0
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 3.1e-61 239.6 374 42.5
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 3.2e-58 229.6 295 46.8
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 7.8e-57 224.9 260 53.1
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.4e-51 205.3 264 51.9
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 2.3e-45 186.8 224 46.4
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 3.1e-45 186.4 117 81.2
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 4.1e-42 176.0 273 45.1
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 5.1e-40 169.1 254 42.9
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 9.9e-36 154.8 193 49.7
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.2e-35 153.7 95 78.9
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 7.1e-34 148.7 144 56.2
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 3.5e-33 146.4 96 79.2
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 8.7e-32 141.7 202 41.1
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.3e-31 139.4 93 77.4
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 9.6e-31 138.3 204 46.1
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.1e-30 137.1 122 61.5
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.5e-28 131.0 127 55.1
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.5e-28 131.0 127 55.1
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 2.4e-26 123.6 191 40.8
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 6.6e-24 115.5 241 37.3
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.3e-19 101.3 95 57.9
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 1.9e-18 97.4 139 41.0
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 5.8e-12 75.9 64 67.2
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.7e-11 74.3 82 53.7
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.5e-07 61.2 41 63.4
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 7.4e-07 58.9 36 66.7
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.3e-06 58.2 62 54.8
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 8.2e-06 55.5 57 57.9


User provided reference genes

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