Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 2.9e-254 881.3 418 100.0
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 2.1e-249 865.1 419 98.6
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.6e-225 785.8 415 89.9
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 8.5e-214 746.9 410 86.3
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.3e-206 723.0 363 95.0
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 3.5e-191 671.8 346 91.0
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 2.7e-183 645.6 413 74.1
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 2.1e-180 636.0 411 71.3
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 5.2e-179 631.3 416 72.1
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 8.8e-179 630.6 462 66.7
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 1.8e-176 622.9 416 71.2
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 7.0e-176 620.9 391 73.4
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 3.5e-175 618.6 410 70.2
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 3.5e-175 618.6 403 70.7
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 5.9e-175 617.8 415 70.1
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 2.9e-174 615.5 415 70.1
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 5.0e-174 614.8 413 70.0
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 5.0e-174 614.8 415 70.4
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 5.0e-174 614.8 416 70.0
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 6.5e-174 614.4 375 74.9
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 5.5e-173 611.3 413 69.7
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 9.5e-173 610.5 409 68.7
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.1e-172 609.4 410 69.0
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 2.7e-172 609.0 462 65.4
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 3.0e-171 605.5 414 68.6
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 5.2e-171 604.7 401 69.3
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 1.5e-170 603.2 417 68.3
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 3.4e-170 602.1 411 68.1
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 5.7e-170 601.3 409 68.9
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.7e-169 599.7 406 68.7
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 4.9e-169 598.2 415 68.7
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 8.3e-169 597.4 410 68.3
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 3.1e-168 595.5 411 67.2
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 4.1e-168 595.1 408 69.1
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 9.2e-168 594.0 411 68.4
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.2e-167 593.6 406 69.0
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 1.2e-167 593.6 406 68.5
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 2.0e-167 592.8 360 74.2
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 2.9e-166 589.0 416 67.3
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 6.6e-166 587.8 370 72.4
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 3.3e-165 585.5 419 67.1
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 4.3e-165 585.1 417 65.7
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 2.1e-164 582.8 401 67.1
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 3.6e-164 582.0 418 65.8
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.3e-163 579.3 386 70.7
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 3.0e-163 578.9 407 67.6
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 4.0e-163 578.6 373 70.5
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 8.9e-163 577.4 411 65.7
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 1.2e-162 577.0 402 66.9
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 4.4e-162 575.1 421 65.8
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 9.8e-162 573.9 414 65.7
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.3e-161 573.5 413 67.6
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 6.4e-161 571.2 407 67.1
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.3e-161 570.9 408 64.2
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 1.1e-160 570.5 412 65.3
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 5.4e-160 568.2 406 67.0
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 1.7e-158 563.1 413 63.0
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 3.9e-158 562.0 419 64.2
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 1.5e-157 560.1 407 66.8
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 1.9e-157 559.7 409 65.8
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 1.9e-157 559.7 405 65.4
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 3.3e-157 558.9 408 64.2
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 1.6e-156 556.6 409 63.6
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 8.0e-156 554.3 375 69.9
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 1.8e-155 553.1 412 62.9
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 2.3e-155 552.7 409 65.8
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 2.0e-154 549.7 401 64.8
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.3e-153 547.0 370 70.3
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 1.7e-153 546.6 411 62.8
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.2e-153 546.2 370 70.3
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 2.9e-153 545.8 417 61.9
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 2.9e-153 545.8 384 67.2
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 4.9e-153 545.0 401 63.8
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 1.9e-152 543.1 410 62.4
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 1.9e-152 543.1 408 62.3
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 2.4e-152 542.7 413 62.5
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 5.4e-152 541.6 408 63.5
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 9.2e-152 540.8 373 68.6
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 1.6e-151 540.0 411 62.3
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 3.5e-151 538.9 410 62.0
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 4.6e-151 538.5 406 62.6
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 1.7e-150 536.6 410 61.5
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 8.6e-150 534.3 423 60.8
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 5.6e-149 531.6 436 58.9
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 4.7e-148 528.5 416 61.3
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 1.8e-147 526.6 416 61.5
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 5.2e-147 525.0 343 69.4
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 8.9e-147 524.2 374 66.8
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 7.8e-143 511.1 374 63.4
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.8e-139 500.0 367 66.8
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 3.1e-139 499.2 299 73.6
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 5.2e-139 498.4 416 59.9
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 4.9e-137 491.9 418 57.2
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 3.2e-136 489.2 347 66.6
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 1.6e-135 486.9 379 60.9
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 2.3e-134 483.0 441 56.5
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 9.6e-133 477.6 412 57.3
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 2.9e-129 466.1 409 57.2
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 4.2e-128 462.2 421 54.6
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 3.0e-126 456.1 372 58.6
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.1e-125 454.1 374 58.0
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 2.8e-124 449.5 351 62.1
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 4.8e-124 448.7 307 69.1
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-123 446.8 415 54.7
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 9.0e-123 444.5 351 61.8
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 2.9e-121 439.5 407 52.8
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.9e-119 431.4 362 58.0
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 5.6e-117 425.2 320 64.7
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.3e-116 424.1 392 55.4
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.8e-115 420.2 319 63.9
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.9e-115 418.3 413 52.1
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.1e-109 401.0 199 93.0
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.8e-108 396.4 247 71.3
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 3.7e-108 396.0 357 56.3
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 9.0e-107 391.3 436 47.2
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 2.9e-105 386.3 268 68.3
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 1.4e-104 384.0 274 67.5
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 2.7e-103 379.8 283 58.0
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-101 373.6 418 49.0
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 7.6e-98 361.7 200 80.0
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 7.2e-96 355.1 412 45.1
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 6.9e-91 338.6 261 62.1
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.7e-86 322.0 344 50.0
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.7e-85 318.9 272 56.6
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-79 300.4 202 67.8
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.9e-78 296.2 202 66.3
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.4e-75 287.7 408 40.9
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-75 287.7 200 66.0
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 6.5e-73 278.9 167 72.5
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.4e-70 271.2 296 42.6
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 1.2e-66 258.1 165 70.3
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.7e-55 219.5 194 56.7
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.7e-53 212.6 144 66.7
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.7e-53 212.6 144 66.7
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.7e-53 212.6 144 66.7
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.3e-52 209.1 144 66.0
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 3.8e-49 199.9 255 44.7
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.5e-48 197.2 154 60.4
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 1.5e-45 188.0 115 71.3
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.1e-43 179.9 186 48.9
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 1.2e-42 178.3 86 95.3
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-41 174.1 96 77.1
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 1.3e-36 158.3 108 67.6
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.9e-32 144.4 100 65.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 1.3e-28 131.7 84 67.9
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-22 111.3 79 62.0
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-21 107.5 62 72.6
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 6.6e-17 92.8 139 38.1
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 4.4e-13 80.1 44 79.5
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 4.4e-13 80.1 43 76.7
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 4.2e-11 73.6 70 54.3
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.1e-10 71.2 77 41.6
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 1.0e-09 68.9 262 26.0
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.3e-08 62.8 113 37.2
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 1.3e-07 62.0 263 23.2
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 1.6e-07 61.6 36 77.8
arahy.Tifrunner.gnm1.ann1.RXWW1P Arachis hypogaea HOM05D001147 ORTHO05D000823 6.9e-06 56.2 62 48.4


User provided reference genes

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