Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 0.0e+00 1097.8 559 100.0
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 0.0e+00 1090.9 559 99.5
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 7.6e-312 1073.2 559 97.7
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.5e-293 1011.5 559 92.3
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 4.2e-285 984.2 559 90.0
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 2.3e-283 978.4 559 89.3
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 6.6e-246 854.0 573 78.4
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 1.2e-244 849.7 570 79.1
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 3.4e-242 841.6 573 78.0
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 4.4e-242 841.3 579 78.1
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.7e-241 839.3 568 77.6
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 2.2e-241 839.0 573 76.6
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 8.3e-241 837.0 572 78.1
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.1e-240 836.6 573 77.7
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 7.0e-240 833.9 567 75.1
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 7.0e-240 833.9 574 76.5
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.2e-239 833.2 570 76.8
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 2.7e-239 832.0 573 76.3
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.6e-239 831.2 577 76.1
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 3.0e-238 828.6 569 76.4
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.5e-237 826.2 575 76.2
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.3e-237 825.1 591 74.8
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 9.5e-237 823.5 575 76.7
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.2e-236 823.2 570 76.3
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 8.0e-236 820.5 570 76.1
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 3.1e-235 818.5 568 75.9
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 3.1e-235 818.5 569 75.9
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 6.8e-235 817.4 569 75.7
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.2e-234 816.6 583 74.3
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 2.0e-234 815.8 569 76.1
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 5.8e-234 814.3 567 76.7
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 1.3e-233 813.1 583 74.1
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.3e-233 813.1 557 75.9
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 1.9e-232 809.3 571 75.5
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 2.4e-232 808.9 570 75.3
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 4.1e-232 808.1 576 74.7
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 2.7e-231 805.4 569 75.0
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 3.5e-231 805.1 563 76.7
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 6.0e-231 804.3 570 74.6
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 3.0e-230 802.0 570 75.4
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 8.6e-230 800.4 572 75.0
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 1.1e-229 800.0 574 74.2
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 1.1e-229 800.0 570 74.4
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 2.5e-229 798.9 574 73.7
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 4.3e-229 798.1 574 74.6
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 4.3e-229 798.1 575 73.6
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 4.3e-229 798.1 630 68.9
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 5.6e-229 797.7 589 72.7
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 9.5e-229 797.0 573 74.2
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 8.1e-228 793.9 573 73.5
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 1.1e-227 793.5 568 74.3
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 2.6e-226 788.9 568 74.5
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 4.4e-226 788.1 578 72.7
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 9.9e-226 786.9 571 72.0
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 2.2e-225 785.8 568 74.6
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 4.9e-225 784.6 568 73.8
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 6.4e-225 784.3 568 72.9
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.1e-224 783.5 530 77.5
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 2.4e-224 782.3 559 75.3
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 3.0e-222 775.4 575 73.2
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 8.6e-222 773.9 574 72.1
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.5e-221 772.3 572 69.9
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 5.6e-221 771.2 570 70.0
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.6e-220 769.6 572 69.8
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 2.1e-220 769.2 576 72.2
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 4.7e-220 768.1 569 72.4
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.4e-219 766.5 572 69.6
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.1e-219 765.4 572 69.6
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.2e-218 763.5 552 73.4
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 7.6e-218 760.8 568 73.2
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 7.6e-218 760.8 734 59.1
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 1.3e-217 760.0 572 71.3
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.1e-216 756.9 587 69.7
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 4.6e-215 751.5 575 70.1
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 7.8e-215 750.7 599 66.4
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 1.6e-212 743.0 577 70.9
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 8.1e-212 740.7 567 71.8
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 9.0e-211 737.3 672 62.2
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 2.0e-210 736.1 591 68.9
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 1.3e-209 733.4 583 70.0
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 4.9e-209 731.5 581 68.3
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 4.2e-208 728.4 570 67.4
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.0e-206 722.2 534 72.1
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.5e-205 719.9 577 67.1
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 4.3e-205 718.4 562 68.9
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 1.6e-204 716.5 588 68.7
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.1e-203 712.2 569 68.2
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 5.3e-203 711.4 505 73.9
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 1.2e-202 710.3 572 68.4
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 1.3e-201 706.8 565 68.0
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 2.2e-201 706.1 601 63.9
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 3.8e-201 705.3 519 73.0
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 3.2e-200 702.2 501 73.9
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 1.6e-199 699.9 583 66.2
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 4.6e-199 698.4 558 67.0
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 4.6e-199 698.4 558 66.8
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 4.6e-199 698.4 558 67.0
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 4.6e-199 698.4 558 67.0
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 5.1e-198 694.9 558 66.8
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 5.1e-198 694.9 530 70.2
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 3.7e-196 688.7 579 64.4
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 8.1e-196 687.6 586 64.2
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 3.1e-195 685.6 572 65.4
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 9.9e-194 680.6 571 65.1
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 6.0e-183 644.8 570 63.3
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.5e-181 639.4 570 63.5
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 3.0e-174 615.9 491 67.6
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 4.1e-171 605.5 591 57.7
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 8.8e-166 587.8 418 74.6
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 1.7e-137 493.8 607 50.6
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 3.8e-137 492.7 385 70.6
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 3.8e-137 492.7 587 52.8
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.6e-130 470.7 495 55.6
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.6e-130 470.7 495 55.6
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.6e-130 470.7 495 55.6
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 4.7e-127 459.1 476 57.1
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.4e-123 447.6 346 69.1
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 4.6e-114 416.0 261 81.6
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 5.8e-85 319.3 248 70.2
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-84 318.2 254 67.3
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 6.4e-84 315.8 543 42.2
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 1.6e-79 301.2 353 52.1
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 6.9e-78 295.8 196 79.6
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 2.0e-77 294.3 162 90.1
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 3.8e-76 290.0 333 54.7
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 7.4e-72 275.8 156 87.8
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 8.4e-68 262.3 166 80.1
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 5.5e-67 259.6 194 72.7
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 2.1e-66 257.7 414 42.0
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 1.8e-62 244.6 269 53.5
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 2.4e-54 217.6 167 70.1
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.0e-53 214.5 414 39.6
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 1.0e-52 212.2 120 90.8
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 2.9e-52 210.7 207 59.4
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.3e-49 201.1 134 73.1
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 3.2e-43 180.6 585 30.8
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 9.4e-43 179.1 171 62.0
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 2.6e-40 171.0 115 78.3
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 2.7e-34 151.0 147 62.6
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 3.4e-32 144.1 153 57.5
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 3.5e-29 134.0 87 79.3
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 1.2e-26 125.6 150 50.7
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 9.8e-24 115.9 75 76.0
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 7.0e-22 109.8 182 39.6
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.6e-21 108.6 84 69.0
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 2.0e-21 108.2 123 50.4
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.3e-20 105.5 58 91.4
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 8.0e-18 96.3 66 74.2
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 6.8e-17 93.2 117 46.2
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 7.5e-16 89.7 134 42.5
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 1.7e-15 88.6 93 49.5
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.4e-14 85.5 69 72.5
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 1.2e-13 82.4 83 47.0
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.6e-13 80.5 53 75.5
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 1.1e-11 75.9 49 77.6
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 4.7e-10 70.5 63 60.3
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 1.4e-09 68.9 36 83.3
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 2.6e-08 64.7 71 52.1
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 9.8e-08 62.8 71 50.7


User provided reference genes

Program Settings