Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 6.3e-47 190.3 87 100.0
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 6.6e-44 180.3 86 96.5
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 6.6e-44 180.3 86 96.5
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.5e-43 179.1 86 95.3
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 1.5e-43 179.1 86 95.3
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 9.5e-43 176.4 86 93.0
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 3.6e-42 174.5 86 93.0
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 4.7e-42 174.1 86 90.7
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 6.1e-42 173.7 86 90.7
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.0e-41 172.9 86 91.9
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 1.8e-41 172.2 86 89.5
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 4.0e-41 171.0 86 89.5
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 5.2e-41 170.6 86 87.2
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 6.8e-41 170.2 86 90.7
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 8.9e-41 169.9 86 88.4
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 8.9e-41 169.9 86 88.4
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 1.2e-40 169.5 86 87.2
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 1.2e-40 169.5 86 88.4
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 1.5e-40 169.1 86 87.2
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 1.5e-40 169.1 86 88.4
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 5.8e-40 167.2 86 87.2
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 7.5e-40 166.8 86 87.2
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 1.7e-39 165.6 86 84.9
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 1.7e-39 165.6 86 84.9
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 2.2e-39 165.2 86 86.0
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 2.2e-39 165.2 86 83.7
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 4.9e-39 164.1 86 83.7
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 6.4e-39 163.7 86 84.9
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.1e-38 162.9 86 82.6
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 2.4e-38 161.8 86 81.4
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 3.2e-38 161.4 86 82.6
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 3.2e-38 161.4 86 82.6
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 3.2e-38 161.4 86 82.6
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 4.1e-38 161.0 86 82.6
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 5.4e-38 160.6 87 83.9
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 1.2e-37 159.5 86 81.4
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 1.6e-37 159.1 86 83.7
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 3.5e-37 157.9 86 81.4
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 3.5e-37 157.9 86 79.1
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 4.6e-37 157.5 86 80.2
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 4.6e-37 157.5 86 80.2
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 6.0e-37 157.1 86 80.2
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 6.0e-37 157.1 86 81.4
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 7.8e-37 156.8 86 81.4
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 7.8e-37 156.8 86 81.4
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 1.0e-36 156.4 86 79.1
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.0e-36 156.4 86 80.2
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 1.3e-36 156.0 86 81.4
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 3.9e-36 154.5 86 75.6
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 3.9e-36 154.5 86 80.2
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 3.9e-36 154.5 86 79.1
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 5.0e-36 154.1 86 76.7
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 6.6e-36 153.7 86 77.9
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 6.6e-36 153.7 86 75.6
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 6.6e-36 153.7 86 75.6
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 6.6e-36 153.7 86 77.9
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 6.6e-36 153.7 86 79.1
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 8.6e-36 153.3 86 74.4
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 1.1e-35 152.9 85 76.5
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 1.5e-35 152.5 86 73.3
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.9e-35 152.1 86 77.9
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 1.9e-35 152.1 86 77.9
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 2.5e-35 151.8 86 76.7
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 3.3e-35 151.4 86 74.4
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 3.3e-35 151.4 86 77.9
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 3.3e-35 151.4 86 74.4
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 3.3e-35 151.4 86 76.7
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 4.3e-35 151.0 86 75.6
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 4.3e-35 151.0 86 74.4
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 4.3e-35 151.0 86 74.4
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 4.3e-35 151.0 86 74.4
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 4.3e-35 151.0 86 74.4
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 4.3e-35 151.0 86 74.4
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.3e-35 151.0 86 75.6
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 5.6e-35 150.6 86 76.7
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 9.5e-35 149.8 86 74.4
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 9.5e-35 149.8 86 74.4
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 9.5e-35 149.8 86 74.4
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 9.5e-35 149.8 86 73.3
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 9.5e-35 149.8 86 75.6
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 1.6e-34 149.1 86 72.1
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 1.6e-34 149.1 86 73.3
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 2.1e-34 148.7 86 76.7
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 2.8e-34 148.3 88 70.5
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 2.8e-34 148.3 86 74.4
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 3.6e-34 147.9 86 74.4
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 3.6e-34 147.9 86 72.1
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 4.7e-34 147.5 86 73.3
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 6.2e-34 147.1 86 74.4
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 6.2e-34 147.1 86 75.6
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 1.1e-33 146.4 86 73.3
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 1.8e-33 145.6 86 69.8
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 2.3e-33 145.2 86 72.1
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-33 145.2 86 72.1
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 4.0e-33 144.4 86 73.3
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 8.9e-33 143.3 90 70.0
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 8.9e-33 143.3 90 70.0
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 8.9e-33 143.3 86 73.3
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.5e-32 142.5 85 70.6
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-31 138.7 86 70.9
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.9e-31 138.3 86 70.9
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.4e-31 137.1 85 71.8
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-30 136.0 86 68.6
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.2e-30 134.8 86 69.8
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 4.1e-30 134.4 86 65.1
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.4e-30 134.0 86 68.6
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 5.4e-30 134.0 85 67.1
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 5.4e-30 134.0 85 67.1
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 9.2e-30 133.3 85 64.7
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.2e-29 132.9 115 57.4
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 1.2e-29 132.9 85 61.2
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 7.8e-29 130.2 85 65.9
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-28 129.8 86 67.4
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.5e-27 123.2 79 65.8
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 8.9e-25 116.7 86 61.6
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 3.4e-24 114.8 85 60.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 3.2e-22 108.2 76 63.2
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.7e-21 105.1 53 84.9
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.7e-21 105.1 53 84.9
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.1e-19 99.8 80 58.8
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 8.1e-18 93.6 53 75.5
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 2.6e-16 88.6 46 80.4
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.7e-15 85.9 86 47.7
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.1e-14 83.2 83 43.4
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 4.6e-13 77.8 34 91.2
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 4.6e-13 77.8 34 91.2
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 1.7e-12 75.9 34 91.2
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 3.0e-12 75.1 34 94.1
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.1e-12 74.3 56 62.5
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 1.9e-11 72.4 34 85.3
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.3e-11 71.2 34 85.3
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.3e-11 71.2 34 85.3
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.3e-11 71.2 34 85.3
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.3e-11 71.2 34 85.3
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 5.6e-11 70.9 38 81.6
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.8e-10 68.6 34 82.4
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.1e-09 65.1 35 77.1


User provided reference genes

Program Settings