Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 2314.7 1317 100.0
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 2268.0 1317 98.3
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 2162.1 1317 92.2
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1945.6 1317 80.7
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1909.0 1261 83.9
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1879.4 1317 74.3
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1840.9 1317 73.4
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1833.9 1317 73.2
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1827.0 1303 74.0
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1818.1 1317 73.0
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1783.1 1317 72.2
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1760.0 1317 70.6
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1756.5 1317 71.3
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1752.6 1321 71.4
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1741.9 1317 70.5
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1740.3 1317 70.1
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1726.8 1317 70.1
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1726.1 1317 68.6
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1720.3 1318 70.9
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1717.6 1365 69.1
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1713.7 1317 70.0
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1713.0 1317 68.9
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1705.6 1317 69.7
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1704.5 1317 69.9
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1702.2 1317 68.6
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1686.4 1317 67.4
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1680.2 1317 67.0
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1679.5 1317 67.2
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1679.1 1303 72.3
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1676.0 1436 64.3
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1674.8 1317 67.4
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1673.7 1317 67.5
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1672.5 1333 68.1
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1672.1 1317 68.2
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1666.7 1317 67.4
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1665.2 1549 61.0
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1664.4 1317 67.7
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1663.7 1317 66.7
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1656.0 1317 66.0
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1654.8 1325 68.0
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1649.8 1317 67.1
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1641.7 1317 68.0
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1627.1 1317 65.8
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1624.8 1317 65.8
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1622.1 1317 67.1
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1615.5 1317 66.5
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1609.7 1317 67.0
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1605.9 1340 65.8
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1603.2 1343 65.2
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1603.2 1317 69.2
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1598.9 1332 65.9
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1598.6 1332 65.9
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1598.6 1359 64.9
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1587.8 1318 68.7
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1586.2 1370 63.1
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1583.5 1318 68.6
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1583.2 1318 68.6
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1578.9 1317 64.8
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1577.8 1210 69.7
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1577.4 1318 64.6
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1571.2 1317 66.7
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1552.0 1210 68.8
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1543.9 1401 62.0
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1542.3 1303 64.5
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1530.4 1317 64.4
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1524.6 1337 62.5
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1523.5 1317 63.5
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1521.9 1317 62.8
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1521.5 1303 64.2
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1520.4 1317 62.3
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1504.6 1317 63.1
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1504.2 1318 63.1
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1486.1 1370 64.5
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1484.5 1254 64.2
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1432.9 1303 60.4
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1282.7 1025 73.5
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1216.4 1317 51.6
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1130.2 1319 50.1
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 4.9e-308 1061.6 1319 46.7
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 2.6e-301 1039.3 1062 53.5
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 5.2e-294 1015.0 902 64.4
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.7e-289 1000.0 1316 46.2
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 1.5e-285 986.9 1059 54.3
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.3e-268 930.6 743 66.1
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.6e-266 923.7 1256 45.7
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 8.7e-265 917.9 759 65.1
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.1e-262 909.4 888 58.1
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 1.5e-256 890.6 761 61.6
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 2.0e-253 880.2 767 63.6
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 3.4e-253 879.4 669 69.7
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 2.5e-251 873.2 1102 48.5
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 1.5e-245 854.0 631 69.4
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 1.0e-244 851.3 631 69.1
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.3e-236 824.3 790 59.2
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.7e-224 782.3 631 67.5
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.4e-222 776.9 558 74.6
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 3.1e-222 776.5 729 58.3
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 5.5e-219 765.8 728 56.6
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 2.4e-214 750.4 1263 38.6
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.3e-211 739.6 594 66.8
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.3e-211 739.6 594 66.8
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 1.5e-203 714.5 735 55.9
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 4.6e-189 666.4 592 62.8
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 3.9e-164 583.6 1375 32.7
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 7.6e-160 569.3 350 83.7
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.2e-157 562.0 524 61.8
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.1e-149 534.6 375 73.6
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 7.4e-139 499.6 1383 33.9
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.1e-137 495.7 296 86.5
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 1.7e-135 488.4 428 61.9
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 6.1e-133 479.9 389 64.8
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 1.0e-132 479.2 1347 31.8
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 1.3e-130 472.2 456 58.6
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 6.3e-122 443.4 1355 28.0
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.2e-118 429.9 222 93.7
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.6e-117 428.7 244 88.5
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 8.8e-116 422.9 264 82.2
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 2.9e-111 407.9 224 88.8
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 9.8e-107 392.9 846 37.0
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 6.3e-98 363.6 317 61.8
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.5e-96 357.5 408 52.9
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 2.5e-94 351.7 187 94.1
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 9.8e-91 339.7 320 59.1
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.7e-87 328.9 223 75.3
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 4.3e-70 271.2 177 76.8
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 3.2e-65 255.0 126 97.6
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.7e-55 222.6 140 84.3
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 9.0e-52 210.3 192 59.4
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 5.8e-51 207.6 139 80.6
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 1.5e-43 183.0 170 55.9
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 4.3e-38 164.9 173 54.3
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 4.8e-37 161.4 87 93.1
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.6e-35 155.6 106 77.4
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 2.5e-33 149.1 114 66.7
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 3.5e-32 145.2 72 88.9
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 4.1e-28 131.7 141 52.5
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.1e-22 113.6 100 63.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 3.7e-21 108.6 64 84.4
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 6.3e-21 107.8 106 59.4
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 5.3e-20 104.8 64 79.7
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 5.9e-19 101.3 90 60.0
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 1.4e-12 80.1 77 57.1
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 5.3e-12 78.2 121 45.5
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 2.2e-10 72.8 202 30.7
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 5.0e-10 71.6 83 51.8
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 8.5e-10 70.9 58 58.6
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 1.9e-09 69.7 63 63.5
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 3.6e-08 65.5 61 63.9
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 6.1e-08 64.7 56 67.9
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 1.4e-07 63.5 77 46.8
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 5.7e-06 58.2 33 87.9


User provided reference genes

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