Gene: Sopen05g032270

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g032270
  • Transcript Identifier Sopen05g032270.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 75775776-75801566 : positive

Gene Family Information

  • ID HOM05D005045
  • #Genes/#Species 148/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g032270.1

Descriptions

  • Description Encodes the Arabidopsis RAD50 homologue. It is involved in double strand break repair. Component of the meiotic recombination complex that processes meiotic double-strand-breaks to produce single-stranded DNA ends, which act in the homology search and recombination. Accumulates in the nucleus during meiotic prophase, a process regulated by PHS1. | RAD50 | FUNCTIONS IN: zinc ion binding, ATP binding, nuclease activity | INVOLVED IN: DNA repair, double-strand break repair, telomere capping, mitotic recombination, telomere maintenance | LOCATED IN: nucleus, Mre11 complex, cytoplasm | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Zinc hook, Rad50 , Rad50 zinc hook , Recombination/repair protein Rad50
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000723
IEA
InterProtelomere maintenance
GO:0006281
IEA
InterProDNA repair
GO:0016233
ISO
PLAZA Integrative Orthologytelomere capping AT2G31970
GO:0006312
ISO
PLAZA Integrative Orthologymitotic recombination AT2G31970
GO:0006302
ISO
PLAZA Integrative Orthologydouble-strand break repair AT2G31970

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G31970

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0030870
IEA
InterProMre11 complex
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G31970

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013134 RAD50, zinc hook
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR004584 DNA repair protein Rad50, eukaryotes
IPR038729 Rad50/SbcC-type AAA domain
Mapman id Description
13.3.5.3.1.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.MRE11-RAD50-NBS1 (MRN) complex.component RAD50
14.3.3.2 DNA damage response.homologous recombination repair (HR).DNA resection MRE11-RAD50-NBS1 (MRN) complex.component RAD50