Gene: Solyc05g053800.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc05g053800.3
  • Transcript Identifier Solyc05g053800.3.1
  • Gene Type Coding gene
  • Location SL4.0ch05 : 63206781-63230660 : positive

Gene Family Information

  • ID HOM05D005045
  • #Genes/#Species 148/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc05g053800.3.1
  • uniprot A0A3Q7HGI7
  • gene_id Solyc05g053800

Descriptions

  • Description DNA repair protein RAD50 (AHRD V3.3 *** A0A2G2ZJV2_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032508
IBA
GOA DatabaseDNA duplex unwinding
GO:0006312
ISO
PLAZA Integrative Orthologymitotic recombination AT2G31970
GO:0016233
ISO
PLAZA Integrative Orthologytelomere capping AT2G31970
GO:0090305
IBA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0070192
IBA
GOA Databasechromosome organization involved in meiotic cell cycle
GO:0006302
IBA
GOA Databasedouble-strand break repair
GO:0007004
IBA
GOA Databasetelomere maintenance via telomerase
GO:0000723
IEA
GOA Databasetelomere maintenance
GO:0000723
IEA
InterProtelomere maintenance
GO:0000722
IBA
GOA Databasetelomere maintenance via recombination
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G31970
GO:0051880
IBA
GOA DatabaseG-quadruplex DNA binding
GO:0003691
IBA
GOA Databasedouble-stranded telomeric DNA binding
GO:0043047
IBA
GOA Databasesingle-stranded telomeric DNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016887
IEA
InterProATP hydrolysis activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G31970
GO:0030870
IBA
IEA
GOA DatabaseMre11 complex
GO:0030870
IEA
InterProMre11 complex
GO:0000794
IBA
GOA Databasecondensed nuclear chromosome
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038729 Rad50/SbcC-type AAA domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR004584 DNA repair protein Rad50, eukaryotes
IPR013134 RAD50, zinc hook
Mapman id Description
13.3.5.3.1.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.MRE11-RAD50-NBS1 (MRN) complex.component RAD50
14.3.3.2 DNA damage response.homologous recombination repair (HR).DNA resection MRE11-RAD50-NBS1 (MRN) complex.component RAD50