Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 2.6e-156 555.4 300 100.0
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 2.9e-155 552.0 300 99.3
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 3.7e-155 551.6 298 99.3
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 9.5e-151 537.0 300 96.3
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 4.9e-147 524.6 298 94.0
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 3.0e-144 515.4 300 94.0
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 5.6e-143 511.1 298 93.6
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 2.0e-140 502.7 302 88.4
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 1.3e-139 500.0 299 86.3
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 7.1e-138 494.2 300 83.7
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 2.5e-135 485.7 300 81.7
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.3e-134 483.4 299 84.6
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 2.1e-134 482.6 301 84.7
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 2.6e-132 475.7 301 85.7
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 4.9e-131 471.5 300 81.3
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.4e-130 469.9 301 80.1
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.4e-130 469.9 306 79.7
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.9e-130 469.5 304 79.9
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.4e-130 469.2 299 85.3
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 2.4e-130 469.2 305 84.3
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 4.2e-130 468.4 304 80.9
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 5.4e-130 468.0 301 83.1
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 5.4e-130 468.0 300 83.7
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 1.6e-129 466.5 301 79.4
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 2.1e-129 466.1 301 85.0
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 2.1e-129 466.1 304 81.9
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 2.7e-129 465.7 306 80.4
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 4.6e-129 464.9 300 80.3
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 7.9e-129 464.2 302 80.5
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 1.0e-128 463.8 306 81.4
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 1.3e-128 463.4 302 83.1
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.7e-128 463.0 302 80.5
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.7e-128 463.0 300 83.0
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 2.3e-128 462.6 304 80.3
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 3.0e-128 462.2 304 79.3
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 3.0e-128 462.2 302 78.8
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 3.9e-128 461.8 303 80.2
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 5.1e-128 461.5 304 78.9
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 5.1e-128 461.5 304 78.9
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 5.1e-128 461.5 302 80.1
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 5.1e-128 461.5 301 80.7
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 8.7e-128 460.7 296 82.1
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 8.7e-128 460.7 304 82.6
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 8.7e-128 460.7 304 78.9
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.5e-127 459.9 302 81.1
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.5e-127 459.9 302 81.1
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 2.5e-127 459.1 303 79.5
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 3.3e-127 458.8 302 78.8
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 4.3e-127 458.4 304 78.6
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 4.3e-127 458.4 304 82.9
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 7.3e-127 457.6 300 84.7
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 7.3e-127 457.6 300 81.3
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 9.6e-127 457.2 302 78.5
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 1.3e-126 456.8 304 78.3
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.6e-126 456.4 300 80.7
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.6e-126 456.4 302 81.1
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 3.6e-126 455.3 304 80.6
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.6e-126 455.3 305 81.3
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 6.2e-126 454.5 305 79.3
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.1e-125 453.8 304 78.0
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 2.4e-125 452.6 300 77.3
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.1e-125 452.2 300 80.0
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 5.3e-125 451.4 304 77.0
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.2e-124 450.3 303 81.8
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 2.0e-124 449.5 301 80.1
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 9.9e-124 447.2 302 79.8
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 9.9e-124 447.2 300 78.0
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 9.9e-124 447.2 304 76.6
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 2.2e-123 446.0 300 76.7
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 2.9e-123 445.7 302 78.5
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.8e-123 445.3 294 79.9
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 3.8e-123 445.3 305 78.0
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.8e-123 445.3 300 80.0
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 1.1e-122 443.7 283 82.3
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 5.5e-122 441.4 300 77.0
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.2e-121 440.3 300 77.0
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 1.2e-121 440.3 303 75.6
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 2.1e-121 439.5 303 75.6
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.7e-121 439.1 304 74.7
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 3.5e-121 438.7 300 77.3
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 4.6e-121 438.3 300 77.7
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 6.0e-121 438.0 318 73.9
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 6.0e-121 438.0 318 73.9
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 6.0e-121 438.0 318 73.9
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 6.0e-121 438.0 302 79.1
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 1.3e-120 436.8 301 77.4
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.3e-120 436.8 304 74.3
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 1.8e-120 436.4 305 77.0
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 3.0e-120 435.6 303 75.2
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 3.0e-120 435.6 303 75.2
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 3.9e-120 435.3 301 79.1
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 3.9e-120 435.3 302 75.2
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.9e-119 433.0 300 78.3
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 3.3e-119 432.2 303 74.9
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 4.3e-119 431.8 300 74.3
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 2.1e-118 429.5 304 73.0
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 2.8e-118 429.1 302 73.8
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 8.1e-118 427.6 301 77.4
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.8e-117 426.4 300 76.7
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.8e-117 426.4 300 76.7
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.8e-117 426.4 300 76.7
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 4.0e-117 425.2 302 77.2
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 3.4e-116 422.2 300 73.7
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 4.5e-116 421.8 302 77.2
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 5.8e-116 421.4 303 74.3
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 1.3e-115 420.2 303 74.6
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 6.5e-115 417.9 303 74.3
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 3.2e-114 415.6 297 75.1
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 5.3e-109 398.3 315 69.2
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 4.5e-108 395.2 312 69.6
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 1.9e-106 389.8 300 68.0
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 2.3e-104 382.9 303 72.6
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.3e-104 382.9 280 74.6
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 5.1e-104 381.7 299 68.2
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 4.5e-100 368.6 300 64.3
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 1.5e-95 353.6 288 67.4
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 4.1e-93 345.5 327 58.4
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 9.1e-93 344.4 302 60.3
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.7e-91 340.1 195 85.1
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.0e-84 316.6 250 67.2
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 8.0e-81 304.7 301 55.1
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 3.0e-80 302.8 296 57.1
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.1e-79 300.8 300 58.3
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 9.7e-79 297.7 250 65.6
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 5.9e-76 288.5 300 58.7
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 1.2e-68 264.2 299 51.2
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.0e-68 263.5 134 96.3
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 5.9e-68 261.9 196 76.5
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 5.4e-61 238.8 274 55.8
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 1.4e-56 224.2 189 70.4
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 3.7e-54 216.1 204 63.2
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 5.0e-51 205.7 309 43.7
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 8.6e-51 204.9 292 47.3
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 3.6e-49 199.5 192 62.0
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.2e-47 194.5 167 70.1
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.2e-46 190.3 191 61.8
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 8.3e-46 188.3 228 55.3
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 1.7e-43 180.6 199 51.3
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 4.0e-40 169.5 110 79.1
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 2.7e-36 156.8 104 72.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 8.6e-35 151.8 180 48.9
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 7.6e-31 138.7 102 66.7
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 1.4e-29 134.4 219 44.3
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 1.2e-23 114.8 300 37.0
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 3.4e-23 113.2 300 37.0
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 7.6e-23 112.1 77 71.4
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 2.9e-22 110.2 86 66.3
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 2.1e-20 104.0 151 48.3
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 7.8e-20 102.1 61 75.4
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.1e-18 98.2 59 76.3
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 6.9e-16 89.0 112 56.2
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 6.9e-16 89.0 113 54.0
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 9.9e-15 85.1 94 61.7
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 7.1e-13 79.0 68 54.4
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 7.9e-12 75.5 52 82.7
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 2.8e-09 67.0 127 42.5
Peaxi162Scf00134g00138 Petunia axillaris HOM05D004662 ORTHO05D306304 2.4e-08 63.9 41 85.4
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 1.3e-06 58.2 78 46.2


User provided reference genes

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