Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 2.4e-190 668.7 336 100.0
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 5.8e-189 664.1 336 99.1
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 6.0e-178 627.5 336 94.6
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 4.6e-162 574.7 337 87.5
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 5.1e-153 544.7 336 84.5
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 3.3e-144 515.4 338 79.9
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 1.8e-134 483.0 332 72.6
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.7e-132 476.5 339 73.2
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 6.1e-130 468.0 337 70.9
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 3.0e-129 465.7 290 76.9
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 3.9e-129 465.3 286 79.4
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 8.8e-129 464.2 341 69.2
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 2.6e-128 462.6 339 70.5
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.6e-128 462.6 320 71.2
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 3.3e-128 462.2 293 74.7
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 3.3e-128 462.2 295 78.0
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 7.4e-128 461.1 331 71.0
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 1.7e-127 459.9 342 69.6
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 4.8e-127 458.4 334 70.7
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.1e-126 457.2 330 70.0
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 1.1e-126 457.2 322 73.3
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.4e-126 456.8 327 72.2
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.8e-126 456.4 293 75.4
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 3.1e-126 455.7 347 69.2
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 4.1e-126 455.3 317 71.9
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 9.1e-126 454.1 310 75.8
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 2.0e-125 453.0 328 71.3
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 3.5e-125 452.2 329 70.8
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 4.5e-125 451.8 334 71.9
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 4.5e-125 451.8 337 69.4
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 5.9e-125 451.4 283 77.7
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 1.0e-124 450.7 285 76.8
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 1.3e-124 450.3 325 72.0
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 2.9e-124 449.1 346 67.9
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 3.8e-124 448.7 325 71.1
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 3.8e-124 448.7 325 71.1
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 3.8e-124 448.7 331 70.1
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 1.5e-123 446.8 335 70.4
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 5.5e-123 444.9 325 70.8
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 5.5e-123 444.9 325 70.8
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 2.1e-122 443.0 316 71.8
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.1e-122 443.0 300 72.3
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.4e-121 440.3 263 81.0
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.4e-121 440.3 319 69.0
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 3.0e-121 439.1 342 69.3
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 6.7e-121 438.0 298 73.5
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 7.5e-120 434.5 341 67.2
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 9.7e-120 434.1 332 66.0
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.3e-119 433.7 328 68.9
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 2.2e-119 433.0 302 68.5
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 6.3e-119 431.4 336 66.4
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 8.3e-119 431.0 328 69.5
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.4e-118 430.3 319 67.7
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 1.4e-118 430.3 286 73.8
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.8e-118 429.9 319 67.1
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 5.3e-118 428.3 340 65.0
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 9.1e-118 427.6 325 66.2
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.2e-117 427.2 268 84.0
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 2.0e-117 426.4 318 69.8
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 2.0e-117 426.4 325 65.2
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 2.9e-116 422.5 288 71.5
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 3.8e-116 422.2 328 66.2
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 5.0e-116 421.8 330 66.7
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 5.0e-116 421.8 330 64.2
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 6.5e-116 421.4 328 67.1
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 6.5e-116 421.4 341 66.6
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 8.5e-116 421.0 318 67.3
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 1.5e-115 420.2 348 64.1
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 1.9e-115 419.9 250 80.0
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 2.5e-115 419.5 338 66.0
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 7.2e-115 417.9 287 71.8
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.0e-113 412.1 254 76.4
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 8.8e-113 411.0 334 65.0
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 7.5e-112 407.9 280 73.2
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 2.8e-111 406.0 225 85.3
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 1.8e-110 403.3 337 62.6
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 7.0e-110 401.4 222 84.7
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 2.7e-109 399.4 286 69.6
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 4.5e-109 398.7 223 83.4
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 2.3e-108 396.4 295 69.5
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 2.9e-108 396.0 286 69.9
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.9e-107 393.3 327 63.3
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 1.4e-105 387.1 319 62.7
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.8e-103 379.4 287 66.6
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 2.5e-99 366.3 349 59.0
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 2.1e-98 363.2 205 84.4
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 2.6e-96 356.3 300 62.7
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 9.8e-96 354.4 371 54.4
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.4e-94 350.5 336 58.6
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 4.1e-94 349.0 226 75.7
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.0e-93 346.7 330 58.5
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.0e-92 344.4 329 58.1
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 5.0e-92 342.0 257 64.6
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.5e-91 340.5 227 70.5
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.5e-91 340.5 227 70.5
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 1.5e-88 330.5 495 43.2
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 1.2e-85 320.9 266 63.9
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 9.9e-80 301.2 267 61.0
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.9e-78 297.0 257 55.6
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.7e-76 290.4 167 81.4
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 4.7e-74 282.3 288 49.0
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 1.1e-70 271.2 288 49.0
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 1.7e-68 263.8 224 61.6
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 9.0e-65 251.5 144 84.0
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.5e-64 250.8 220 56.4
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.0e-60 238.0 226 57.5
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.3e-60 237.7 213 56.3
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 4.3e-59 232.6 205 52.7
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 1.1e-57 228.0 197 64.5
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 6.9e-57 225.3 215 57.7
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.4e-54 217.6 249 51.8
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 5.5e-46 189.1 165 60.0
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 2.5e-38 163.7 97 80.4
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.5e-35 154.5 109 71.6
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 1.8e-33 147.5 175 41.1
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.5e-27 127.9 154 46.1
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 5.3e-25 119.4 61 86.9
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 1.9e-22 110.9 145 42.8
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.2e-21 108.2 105 55.2
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.6e-13 81.3 43 88.4
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.4e-09 67.4 68 50.0
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.4e-09 67.4 68 50.0
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 4.1e-09 66.6 179 35.2
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.1e-06 58.5 64 46.9


User provided reference genes

Program Settings