Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 2.6e-149 531.9 254 100.0
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 5.4e-147 524.2 254 98.0
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 6.2e-119 431.0 250 84.0
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 9.3e-115 417.2 243 81.9
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 3.5e-114 415.2 250 82.0
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 3.0e-113 412.1 203 93.6
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 5.5e-107 391.3 191 96.3
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 5.3e-102 374.8 237 71.7
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 2.0e-101 372.9 233 72.1
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 2.2e-100 369.4 219 76.3
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 5.0e-100 368.2 244 69.3
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 6.5e-100 367.9 223 74.4
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.1e-99 367.1 219 75.8
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 2.5e-99 365.9 222 75.2
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 2.5e-99 365.9 219 74.0
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 2.1e-98 362.8 223 73.1
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 6.1e-98 361.3 240 69.2
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 1.0e-97 360.5 220 73.2
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 1.8e-97 359.8 229 71.2
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 2.3e-97 359.4 229 71.6
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 3.0e-97 359.0 228 71.5
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 3.9e-97 358.6 233 72.1
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 3.9e-97 358.6 233 70.8
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 3.9e-97 358.6 228 71.9
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 1.1e-96 357.1 220 74.1
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 1.5e-96 356.7 219 74.0
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 3.3e-96 355.5 223 74.0
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 5.7e-96 354.8 218 72.9
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 5.7e-96 354.8 255 66.3
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 5.7e-96 354.8 255 66.3
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 1.7e-95 353.2 226 72.6
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 2.8e-95 352.4 227 71.4
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 4.8e-95 351.7 253 68.4
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 6.3e-95 351.3 230 71.3
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 8.2e-95 350.9 231 69.7
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 8.2e-95 350.9 214 75.7
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.1e-94 350.5 237 69.6
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 2.4e-94 349.4 219 72.6
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 3.1e-94 349.0 231 68.8
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 3.1e-94 349.0 225 71.1
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 3.1e-94 349.0 229 70.3
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 4.1e-94 348.6 228 69.7
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 4.1e-94 348.6 237 69.6
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 5.3e-94 348.2 226 72.1
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 5.3e-94 348.2 226 72.1
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 5.3e-94 348.2 226 72.1
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 6.9e-94 347.8 251 67.7
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 6.9e-94 347.8 227 70.0
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 9.1e-94 347.4 216 73.1
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 9.1e-94 347.4 227 69.6
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 2.0e-93 346.3 222 70.3
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 4.5e-93 345.1 221 71.9
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 4.5e-93 345.1 252 65.1
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 1.3e-92 343.6 218 71.6
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 1.7e-92 343.2 224 72.3
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 1.7e-92 343.2 241 67.6
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 2.9e-92 342.4 223 71.3
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 3.8e-92 342.0 245 65.3
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 5.0e-92 341.7 231 68.4
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 6.5e-92 341.3 238 68.5
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 8.5e-92 340.9 222 71.2
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 1.1e-91 340.5 217 71.0
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 3.2e-91 339.0 259 65.6
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 4.2e-91 338.6 204 73.0
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 1.0e-89 334.0 219 70.3
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 1.4e-89 333.6 228 68.9
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 5.1e-89 331.6 231 67.5
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 2.6e-88 329.3 231 67.1
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 2.6e-88 329.3 249 63.5
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 4.4e-88 328.6 238 64.7
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 5.7e-88 328.2 237 64.6
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 7.4e-88 327.8 238 65.1
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 1.3e-87 327.0 230 67.0
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 1.7e-87 326.6 231 66.7
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 2.8e-87 325.9 215 68.4
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 6.3e-87 324.7 216 66.7
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.8e-86 323.2 218 69.3
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 4.1e-86 322.0 226 67.7
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 1.6e-85 320.1 222 65.8
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 2.0e-85 319.7 237 62.9
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 2.0e-85 319.7 264 59.8
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 3.5e-85 318.9 216 67.6
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 2.2e-84 316.2 237 61.6
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 6.5e-84 314.7 182 75.8
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 3.6e-82 308.9 237 62.9
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 3.3e-80 302.4 201 69.7
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 4.2e-75 285.4 170 78.2
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 1.6e-74 283.5 171 78.4
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 8.8e-73 277.7 181 70.2
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 2.8e-71 272.7 169 75.1
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 7.0e-70 268.1 180 70.0
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 9.1e-70 267.7 148 79.1
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 2.9e-68 262.7 238 58.0
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.4e-65 253.8 181 63.0
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 2.3e-65 253.1 170 70.0
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 1.3e-63 247.3 154 70.1
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 4.9e-63 245.4 166 69.3
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 4.1e-62 242.3 163 73.0
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 6.1e-58 228.4 305 39.3
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 1.5e-51 207.2 270 39.6
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 9.5e-51 204.5 225 49.3
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 4.3e-43 179.1 114 73.7
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 1.0e-36 157.9 179 41.3
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 4.3e-35 152.5 137 52.6
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 8.9e-33 144.8 93 64.5
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 2.0e-32 143.7 188 41.0
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 9.9e-32 141.4 113 65.5
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 4.8e-18 95.9 96 57.3
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 8.1e-18 95.1 68 69.1
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 4.9e-15 85.9 55 60.0
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 4.9e-15 85.9 63 69.8
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.9e-14 84.0 119 41.2
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 2.1e-13 80.5 119 38.7
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 1.5e-11 74.3 51 56.9
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 2.8e-10 70.1 80 42.5
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 3.6e-10 69.7 54 55.6
PRCOL_00003886 Prasinoderma coloniale HOM05D006551 ORTHO05D044110 3.6e-10 69.7 184 28.8
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.1e-09 68.2 118 33.9
PRCOL_00002998 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 4.0e-09 66.2 173 29.5
PRCOL_00000148 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 4.5e-08 62.8 190 27.4
Cfa024972 Carpinus fangiana HOM05D006551 ORTHO05D043702 5.8e-08 62.4 133 32.3


User provided reference genes

Program Settings