Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 1.0e-165 586.6 290 100.0
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.9e-148 529.3 288 92.7
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 2.1e-147 525.8 290 90.3
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.2e-137 493.4 289 84.8
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.5e-132 476.5 288 81.2
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.2e-127 458.8 268 83.6
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 4.5e-121 438.3 287 74.6
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 5.8e-121 438.0 287 73.9
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 7.6e-121 437.6 267 83.9
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.6e-118 429.9 287 73.5
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 2.7e-118 429.1 287 72.1
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 7.9e-118 427.6 266 77.4
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 7.9e-118 427.6 286 71.3
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 3.9e-117 425.2 287 72.1
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.1e-116 423.7 287 71.4
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 3.3e-116 422.2 287 72.8
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.3e-115 420.2 287 71.8
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 4.8e-115 418.3 287 72.8
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.1e-114 417.2 291 70.4
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 3.1e-114 415.6 287 71.4
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 4.0e-114 415.2 287 70.4
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 2.0e-113 412.9 287 70.7
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 2.0e-113 412.9 287 70.7
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 2.6e-113 412.5 287 69.7
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.6e-113 412.5 287 70.7
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 5.8e-113 411.4 286 69.9
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.0e-112 410.6 286 70.3
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.3e-112 410.2 287 69.3
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.3e-112 410.2 287 70.0
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.7e-112 409.8 289 69.2
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.2e-112 409.5 287 69.7
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.2e-112 409.5 287 68.3
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 2.9e-112 409.1 287 70.0
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 3.8e-112 408.7 287 67.9
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.8e-112 408.7 267 73.0
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 4.9e-112 408.3 287 70.0
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.5e-112 407.9 287 70.0
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.4e-111 406.8 287 69.3
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.9e-111 406.4 287 69.3
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 1.9e-111 406.4 287 69.3
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.9e-111 406.4 287 69.7
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.9e-111 406.4 286 69.6
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 3.2e-111 405.6 267 70.4
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 5.5e-111 404.8 291 69.4
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 5.5e-111 404.8 274 70.1
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 7.1e-111 404.4 289 67.8
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.6e-110 403.3 287 68.6
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.6e-110 403.3 289 67.8
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.1e-110 402.9 287 68.3
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.7e-110 402.5 287 70.4
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.5e-110 402.1 287 68.3
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 3.5e-110 402.1 287 67.2
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 3.5e-110 402.1 287 67.9
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 3.5e-110 402.1 287 68.6
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 3.5e-110 402.1 286 66.8
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 6.0e-110 401.4 288 69.1
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.0e-110 401.4 287 70.0
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 1.0e-109 400.6 287 67.9
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 1.3e-109 400.2 287 67.6
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 2.3e-109 399.4 287 66.9
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 5.1e-109 398.3 267 71.2
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 6.7e-109 397.9 287 67.2
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 8.7e-109 397.5 267 70.8
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 8.7e-109 397.5 312 64.1
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 1.1e-108 397.1 287 66.6
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 1.5e-108 396.7 267 70.8
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.9e-108 396.4 287 66.6
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 3.3e-108 395.6 288 65.3
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 4.3e-108 395.2 287 67.9
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 9.6e-108 394.0 288 64.6
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 9.6e-108 394.0 288 64.6
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 9.6e-108 394.0 288 64.6
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 9.6e-108 394.0 287 67.2
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 1.3e-107 393.7 288 64.6
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 1.6e-107 393.3 288 64.6
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 1.6e-107 393.3 288 64.6
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.6e-107 393.3 288 65.6
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.6e-107 393.3 287 66.2
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.6e-107 393.3 287 66.2
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 2.1e-107 392.9 287 67.2
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 2.1e-107 392.9 287 65.9
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 2.1e-107 392.9 287 65.9
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 2.8e-107 392.5 288 64.9
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 2.8e-107 392.5 287 65.9
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.7e-107 392.1 287 68.3
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 8.2e-107 391.0 289 65.4
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.1e-106 390.6 266 70.7
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.1e-106 390.6 316 63.0
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.1e-106 390.6 287 64.5
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.4e-106 390.2 287 64.5
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.8e-106 389.8 287 66.2
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 6.9e-106 387.9 287 64.5
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.5e-105 386.7 287 66.2
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 3.4e-105 385.6 287 67.9
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 5.9e-105 384.8 289 61.9
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 5.5e-103 378.3 291 64.9
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.2e-102 377.1 288 64.9
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.1e-102 376.3 268 66.0
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.6e-102 375.6 266 65.0
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.8e-101 373.2 288 64.6
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 2.3e-101 372.9 273 65.6
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.5e-100 370.2 252 71.4
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 5.7e-100 368.2 287 64.8
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.6e-99 366.7 291 62.9
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.2e-97 360.5 273 65.9
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.6e-97 359.4 246 70.3
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 4.5e-97 358.6 310 59.0
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 1.0e-96 357.5 288 60.4
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.0e-96 357.5 300 60.3
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 5.0e-96 355.1 263 63.5
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 5.0e-96 355.1 287 59.2
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 6.5e-96 354.8 257 68.9
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.4e-95 353.6 286 61.2
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 3.2e-95 352.4 251 70.5
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.2e-95 352.1 286 61.2
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 9.4e-95 350.9 266 65.0
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 4.6e-94 348.6 287 62.0
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.8e-93 346.7 268 64.9
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 3.9e-93 345.5 308 59.1
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 9.7e-92 340.9 287 56.4
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 3.4e-89 332.4 194 81.4
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.3e-88 330.5 291 57.7
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 5.5e-87 325.1 266 62.0
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 2.1e-86 323.2 221 69.7
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 3.0e-85 319.3 224 67.4
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.7e-83 313.5 286 53.8
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 9.4e-79 297.7 327 49.5
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.5e-73 278.9 273 58.6
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.7e-70 268.9 202 61.4
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 3.4e-68 262.7 204 62.7
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 7.5e-68 261.5 287 51.9
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.8e-66 256.9 261 52.1
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 4.2e-63 245.7 170 66.5
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 4.9e-59 232.3 261 46.4
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 8.3e-59 231.5 200 56.5
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 3.2e-50 203.0 133 70.7
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 3.5e-49 199.5 142 65.5
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 4.7e-38 162.5 121 67.8
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 8.6e-32 141.7 112 63.4
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.2e-28 131.3 171 46.8
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 6.0e-25 119.0 84 67.9
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 5.1e-24 115.9 64 81.2
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 6.6e-24 115.5 72 62.5
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.5e-20 104.4 66 71.2
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 2.1e-17 94.0 69 66.7
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.7e-16 90.9 74 55.4
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.5e-15 87.8 55 78.2
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 4.5e-12 76.3 47 74.5
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 3.5e-09 66.6 43 67.4
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 7.9e-09 65.5 147 28.6
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 1.8e-08 64.3 80 45.0
Sopen04g012970 Solanum pennellii HOM05D004712 ORTHO05D005306 4.8e-06 56.2 36 69.4
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 8.1e-06 55.5 155 29.0


User provided reference genes

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