Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 8.9e-190 666.8 336 100.0
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 8.4e-188 660.2 336 98.8
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 4.6e-186 654.4 336 97.9
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 2.4e-174 615.5 337 92.0
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.4e-173 611.7 336 90.8
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 8.4e-172 607.1 336 89.9
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 4.9e-164 581.3 338 87.0
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 3.9e-145 518.5 338 76.3
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 3.9e-145 518.5 338 76.3
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.8e-143 512.3 338 76.9
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 2.8e-143 512.3 338 76.3
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.6e-141 505.8 335 76.1
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 3.4e-141 505.4 336 75.9
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.8e-137 493.0 339 75.5
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 1.3e-135 486.9 340 73.2
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 1.5e-133 479.9 336 72.0
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 2.9e-132 475.7 337 72.7
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 1.4e-131 473.4 336 72.3
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 4.2e-131 471.9 336 73.2
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 7.2e-131 471.1 339 72.3
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 1.2e-130 470.3 338 70.1
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 2.1e-130 469.5 338 70.1
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.3e-129 466.1 338 69.8
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 8.8e-129 464.2 337 71.5
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.1e-128 463.8 336 69.6
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 5.7e-128 461.5 338 70.7
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 1.3e-127 460.3 336 70.8
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.7e-127 459.9 338 69.5
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 2.2e-127 459.5 338 71.6
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 2.2e-127 459.5 338 68.9
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 8.2e-127 457.6 337 70.0
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.1e-126 457.2 338 68.9
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 1.4e-126 456.8 338 71.0
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 2.4e-126 456.1 336 67.3
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 3.1e-126 455.7 338 70.1
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 5.3e-126 454.9 338 68.6
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 5.3e-126 454.9 339 69.6
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 5.3e-126 454.9 338 67.8
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 7.0e-126 454.5 337 69.7
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 7.0e-126 454.5 338 68.0
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 7.0e-126 454.5 337 70.3
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.1e-126 454.1 337 70.9
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 1.2e-125 453.8 342 71.1
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.6e-125 453.4 341 71.6
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 2.0e-125 453.0 337 71.2
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.0e-125 453.0 337 70.9
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 3.5e-125 452.2 336 70.5
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 5.9e-125 451.4 334 68.6
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 7.7e-125 451.1 342 71.6
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 1.3e-124 450.3 343 68.2
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 6.5e-124 448.0 332 67.8
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 6.5e-124 448.0 330 69.1
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.5e-123 446.8 338 68.9
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.9e-123 446.4 338 66.6
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 5.5e-123 444.9 337 68.5
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 1.6e-122 443.4 338 67.8
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 4.7e-122 441.8 337 66.8
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 8.0e-122 441.0 337 69.7
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 8.0e-122 441.0 323 72.1
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.0e-121 440.7 336 69.3
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.8e-121 439.9 382 62.0
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 1.8e-121 439.9 338 67.5
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.2e-120 437.2 338 67.2
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 3.3e-120 435.6 338 66.6
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 3.3e-120 435.6 329 68.1
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 3.3e-120 435.6 336 65.5
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 4.4e-120 435.3 349 68.5
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 9.7e-120 434.1 338 66.6
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 9.7e-120 434.1 355 65.9
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.7e-119 433.3 339 66.7
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 1.7e-119 433.3 338 65.7
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 2.8e-119 432.6 329 67.8
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.1e-118 428.7 336 67.3
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.2e-117 427.2 335 65.7
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.6e-117 426.8 337 65.6
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 2.0e-117 426.4 338 65.4
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 5.9e-117 424.9 338 65.7
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 1.3e-116 423.7 338 65.1
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 2.2e-116 422.9 335 66.0
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 2.2e-116 422.9 338 65.4
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 5.0e-116 421.8 338 65.1
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 1.9e-115 419.9 338 64.5
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.9e-115 419.9 336 65.8
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 3.2e-115 419.1 328 65.9
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 3.2e-115 419.1 328 65.9
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 4.2e-115 418.7 339 64.0
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.2e-114 417.2 337 64.4
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 2.1e-114 416.4 355 61.4
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 2.7e-114 416.0 338 64.8
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 3.6e-114 415.6 329 65.3
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.7e-114 415.2 338 64.5
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 6.1e-114 414.8 338 64.5
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 1.0e-113 414.1 344 64.8
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 3.0e-113 412.5 340 64.4
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.0e-112 409.8 338 65.4
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 7.5e-112 407.9 316 64.9
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.7e-111 406.8 338 64.2
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.8e-111 405.2 336 64.3
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 4.8e-111 405.2 358 61.7
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 7.0e-110 401.4 339 62.8
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.1e-110 401.0 336 63.1
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 4.5e-109 398.7 328 61.3
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.7e-108 396.7 357 59.4
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.7e-108 396.7 357 59.4
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 2.3e-108 396.4 356 62.4
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 5.2e-105 385.2 337 60.2
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 2.8e-103 379.4 339 59.0
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 5.4e-102 375.2 286 69.2
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 2.7e-101 372.9 351 60.7
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 2.9e-100 369.4 351 60.4
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 2.3e-97 359.8 341 58.4
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 8.9e-97 357.8 333 61.3
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 2.0e-96 356.7 268 70.5
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.8e-89 333.6 339 56.3
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 6.8e-89 331.6 345 53.0
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 4.4e-88 328.9 215 78.1
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.3e-81 306.6 246 64.2
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.5e-80 303.9 327 54.1
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 3.0e-76 289.7 192 77.6
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.1e-76 288.9 235 67.2
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.4e-73 280.8 265 60.8
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 3.1e-73 279.6 352 46.6
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 3.3e-67 259.6 255 54.1
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.2e-61 241.1 185 63.2
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.1e-57 228.0 355 41.4
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 2.6e-56 223.4 380 41.8
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.5e-56 222.6 365 40.5
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.2e-55 220.3 355 39.2
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 6.7e-52 208.8 355 42.0
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 5.6e-51 205.7 216 52.8
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 4.2e-46 189.5 211 52.1
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 4.3e-43 179.5 174 50.0
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 3.1e-41 173.3 368 35.3
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 3.0e-36 156.8 363 34.4
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 6.5e-31 139.0 344 33.4
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 7.4e-27 125.6 109 67.0
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 3.4e-24 116.7 91 60.4
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 5.9e-24 115.9 92 57.6
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.3e-23 114.8 345 31.3
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 3.8e-23 113.2 106 50.9
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 5.0e-23 112.8 147 42.9
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 6.5e-23 112.5 92 56.5
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 9.4e-22 108.6 85 61.2
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 2.1e-21 107.5 117 47.9
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.4e-17 94.7 106 59.4
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 4.5e-16 89.7 149 34.2
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-14 85.1 54 70.4
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.9e-14 84.3 80 53.8
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 4.2e-14 83.2 144 32.6
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 8.0e-13 79.0 66 53.0
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 8.0e-13 79.0 58 63.8
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.7e-10 71.2 40 82.5
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.8e-09 67.8 164 32.3
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 4.5e-08 63.2 53 52.8
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 5.9e-08 62.8 42 66.7


User provided reference genes

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