Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 1.5e-250 869.0 430 100.0
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 1.7e-249 865.5 430 99.5
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 1.6e-247 859.0 430 98.6
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 6.4e-233 810.4 432 93.8
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 7.3e-221 770.4 431 89.6
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 3.4e-218 761.5 433 88.7
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 9.3e-216 753.4 433 88.2
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 1.3e-206 723.0 438 83.1
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 1.3e-206 723.0 433 83.8
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.8e-206 722.6 438 82.9
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 3.0e-206 721.8 394 89.3
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 3.9e-206 721.5 394 89.1
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 1.9e-205 719.2 437 83.1
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 2.5e-205 718.8 395 88.4
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 4.3e-205 718.0 430 82.6
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 7.4e-205 717.2 438 82.6
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 9.6e-205 716.8 432 84.0
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.3e-204 716.5 438 82.2
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 2.1e-204 715.7 431 83.5
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 2.8e-204 715.3 433 82.7
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 3.7e-204 714.9 430 83.3
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 6.2e-204 714.1 415 85.3
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 8.2e-204 713.8 431 82.8
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 1.1e-203 713.4 430 82.6
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 2.4e-203 712.2 432 83.1
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 2.4e-203 712.2 403 86.8
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 3.1e-203 711.8 440 83.2
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 2.0e-202 709.1 394 87.8
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 2.0e-202 709.1 394 87.8
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 3.4e-202 708.4 396 86.9
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 4.5e-202 708.0 402 87.1
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 5.8e-202 707.6 415 83.1
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 5.8e-202 707.6 405 85.9
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 7.6e-202 707.2 431 82.1
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 7.6e-202 707.2 431 82.4
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 1.3e-201 706.4 431 82.4
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 1.3e-201 706.4 394 86.8
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 1.3e-201 706.4 432 82.9
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 2.2e-201 705.7 414 84.8
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 3.8e-201 704.9 402 86.8
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 4.9e-201 704.5 395 87.6
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 4.9e-201 704.5 394 87.3
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 6.5e-201 704.1 432 82.4
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 6.5e-201 704.1 431 82.4
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 1.9e-200 702.6 394 86.5
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 3.2e-200 701.8 395 87.3
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 5.5e-200 701.0 431 81.2
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 5.5e-200 701.0 432 81.9
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 5.5e-200 701.0 406 84.7
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 7.1e-200 700.7 431 82.1
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 1.6e-199 699.5 396 85.9
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 1.6e-199 699.5 395 87.1
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 2.7e-199 698.7 435 81.8
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 2.7e-199 698.7 431 82.1
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 3.5e-199 698.4 434 81.3
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 1.0e-198 696.8 434 81.3
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 3.0e-198 695.3 394 86.0
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 3.0e-198 695.3 397 85.6
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 3.0e-198 695.3 395 85.8
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 5.1e-198 694.5 404 82.9
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 6.7e-198 694.1 431 80.0
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 2.5e-197 692.2 380 89.5
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 3.3e-197 691.8 433 80.8
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 1.3e-196 689.9 398 84.4
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 1.3e-196 689.9 397 84.6
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 1.6e-196 689.5 398 83.9
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 3.7e-196 688.3 379 88.9
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 8.2e-196 687.2 418 81.8
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 8.2e-196 687.2 433 80.4
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 8.2e-196 687.2 433 80.4
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.4e-195 686.4 394 85.8
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 1.4e-195 686.4 394 85.0
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 1.8e-195 686.0 395 85.6
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 2.4e-195 685.6 430 79.8
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 9.0e-195 683.7 397 84.6
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 1.5e-194 682.9 432 78.7
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 5.9e-194 681.0 430 78.4
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 1.0e-193 680.2 430 77.9
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 1.0e-193 680.2 414 81.6
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.3e-193 679.9 368 89.7
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 1.7e-193 679.5 429 80.0
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 2.9e-193 678.7 432 78.2
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 1.1e-192 676.8 419 81.9
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 1.9e-192 676.0 394 83.0
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 2.5e-192 675.6 396 83.1
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 2.5e-192 675.6 432 78.0
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 2.5e-192 675.6 402 83.6
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 3.2e-192 675.2 436 78.7
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 1.2e-191 673.3 430 77.9
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 2.7e-191 672.2 434 78.1
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 1.0e-190 670.2 368 89.1
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 1.8e-190 669.5 431 78.7
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 1.8e-190 669.5 426 77.9
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 5.1e-190 667.9 430 78.1
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 8.8e-190 667.2 431 78.4
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 1.5e-189 666.4 395 82.5
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 1.5e-189 666.4 431 77.5
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 1.5e-189 666.4 444 75.7
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.5e-189 666.4 394 83.2
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 7.4e-189 664.1 430 77.0
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 3.7e-188 661.8 430 76.7
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 3.7e-188 661.8 438 76.3
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 4.8e-188 661.4 431 78.0
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 3.4e-186 655.2 376 84.3
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 8.5e-185 650.6 458 72.3
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 3.6e-183 645.2 363 87.1
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 4.8e-180 634.8 368 84.5
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 6.3e-180 634.4 431 74.0
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 4.5e-178 628.2 390 75.1
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 7.2e-176 620.9 396 77.0
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 1.4e-174 616.7 381 82.7
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 1.3e-172 610.1 404 74.8
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 4.8e-172 608.2 379 76.5
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 3.1e-171 605.5 343 85.7
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 1.8e-166 589.7 415 69.6
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 3.6e-159 565.5 378 70.9
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 2.2e-156 556.2 394 71.8
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 5.4e-155 551.6 369 72.1
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 1.6e-154 550.1 327 80.1
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 4.5e-154 548.5 339 80.2
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 4.2e-152 542.0 365 73.4
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 3.0e-150 535.8 378 67.5
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 4.4e-141 505.4 288 85.1
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 7.3e-128 461.5 406 61.1
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 4.7e-127 458.8 299 76.3
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 9.0e-110 401.4 267 76.8
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 1.0e-105 387.9 280 73.2
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 6.3e-71 272.3 358 42.2
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 1.2e-69 268.1 334 43.4
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 3.4e-69 266.5 187 74.9
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 1.5e-56 224.6 119 90.8
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 2.6e-53 213.8 107 94.4
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 4.7e-34 149.8 84 83.3
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 1.1e-30 138.7 84 76.2
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 9.2e-30 135.6 84 73.8
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 1.2e-29 135.2 125 60.8
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 7.5e-24 115.9 76 77.6
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 7.5e-24 115.9 70 80.0
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 1.6e-21 108.2 57 84.2
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 9.8e-16 89.0 195 31.8
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 2.9e-15 87.4 57 77.2
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 5.2e-09 66.6 66 53.0
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 2.0e-08 64.7 40 72.5


User provided reference genes

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