Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g015200 Solanum pennellii HOM05D005531 ORTHO05D006332 1.6e-157 559.3 275 100.0
CAN.G87.3 Capsicum annuum HOM05D005531 ORTHO05D006332 3.6e-128 461.8 278 83.8
MSTRG.22027 Avicennia marina HOM05D005531 ORTHO05D006332 6.1e-96 354.8 294 64.3
Thecc.04G166800 Theobroma cacao HOM05D005531 ORTHO05D006332 6.1e-96 354.8 292 62.7
Dinv09088 Davidia involucrata HOM05D005531 ORTHO05D006332 1.8e-95 353.2 292 63.0
Atru.chr4.1396 Acer truncatum HOM05D005531 ORTHO05D006332 1.7e-93 346.7 289 61.9
CSS0024284 Camellia sinensis var. sinensis HOM05D005531 ORTHO05D006332 2.2e-93 346.3 247 70.9
Cfa015263 Carpinus fangiana HOM05D005531 ORTHO05D006332 2.9e-93 345.9 294 62.2
Oeu021570.1 Olea europaea HOM05D005531 ORTHO05D006332 2.9e-93 345.9 232 73.3
HanXRQChr14g0432131 Helianthus annuus HOM05D005531 ORTHO05D006332 3.7e-93 345.5 284 62.7
SGA_v2.0_scaffold25G10999 Striga asiatica HOM05D005531 ORTHO05D006332 3.7e-93 345.5 228 75.9
Actinidia12100 Actinidia chinensis HOM05D005531 ORTHO05D006332 8.3e-93 344.4 288 61.5
TAR362G0104 Trochodendron aralioides HOM05D005531 ORTHO05D006332 1.9e-92 343.2 294 59.9
Cc01_g03590 Coffea canephora HOM05D005531 ORTHO05D006332 7.0e-92 341.3 209 79.4
CSS0025079 Camellia sinensis var. sinensis HOM05D005531 ORTHO05D006332 1.2e-91 340.5 188 87.2
Eucgr.A00006 Eucalyptus grandis HOM05D005531 ORTHO05D006332 3.5e-91 339.0 285 62.1
GSVIVG01038136001 Vitis vinifera HOM05D005531 ORTHO05D006332 4.6e-91 338.6 293 61.8
Gohir.A02G090900 Gossypium hirsutum HOM05D005531 ORTHO05D006332 6.0e-91 338.2 264 65.2
Gorai.005G123800 Gossypium raimondii HOM05D005531 ORTHO05D006332 7.8e-91 337.8 263 66.2
FvH4_5g12060 Fragaria vesca HOM05D005531 ORTHO05D006332 1.3e-90 337.0 226 73.5
FAN08G1892 Fragaria x ananassa HOM05D005531 ORTHO05D006332 1.3e-90 337.0 226 73.5
FAN18G3014 Fragaria x ananassa HOM05D005531 ORTHO05D006332 1.3e-90 337.0 226 73.5
FAN18G3485 Fragaria x ananassa HOM05D005531 ORTHO05D006332 1.3e-90 337.0 226 73.5
CiPaw.01G171100 Carya illinoinensis HOM05D005531 ORTHO05D006332 3.0e-90 335.9 265 65.3
Lj4g0014314 Lotus japonicus HOM05D005531 ORTHO05D006332 3.9e-90 335.5 285 65.3
FAN04G0151 Fragaria x ananassa HOM05D005531 ORTHO05D006332 6.6e-90 334.7 226 73.0
Lsat_1_v5_gn_2_38340 Lactuca sativa HOM05D005531 ORTHO05D006332 1.5e-89 333.6 212 75.9
SalBow6G4103 Salvia bowleyana HOM05D005531 ORTHO05D006332 2.5e-89 332.8 326 56.7
Gohir.D02G109600 Gossypium hirsutum HOM05D005531 ORTHO05D006332 3.3e-89 332.4 209 76.1
COL.COLO4_07535 Corchorus olitorius HOM05D005531 ORTHO05D006332 7.3e-89 331.3 189 84.1
FAN13G1713 Fragaria x ananassa HOM05D005531 ORTHO05D006332 7.3e-89 331.3 259 65.6
TWI15G0620 Tripterygium wilfordii HOM05D005531 ORTHO05D006332 9.5e-89 330.9 280 62.5
Phvul.003G296200 Phaseolus vulgaris HOM05D005531 ORTHO05D006332 1.6e-88 330.1 192 82.3
Lalb_Chr16g0384491 Lupinus albus HOM05D005531 ORTHO05D006332 3.6e-88 328.9 267 63.7
RcHm_v2.0_Chr4g0406021 Rosa chinensis HOM05D005531 ORTHO05D006332 3.6e-88 328.9 283 64.0
MD04G1048800 Malus domestica HOM05D005531 ORTHO05D006332 1.4e-87 327.0 213 77.0
Manes.04G036700 Manihot esculenta HOM05D005531 ORTHO05D006332 1.8e-87 326.6 294 60.5
Glyma.02G137000 Glycine max HOM05D005531 ORTHO05D006332 8.9e-87 324.3 190 80.5
MELO3C033213.2 Cucumis melo HOM05D005531 ORTHO05D006332 3.4e-86 322.4 255 66.3
ECA238G0637 Erigeron canadensis HOM05D005531 ORTHO05D006332 9.8e-86 320.9 189 82.0
THA.LOC104817577 Tarenaya hassleriana HOM05D005531 ORTHO05D006332 1.3e-85 320.5 194 80.4
Ca_18643_v3 Cicer arietinum L. HOM05D005531 ORTHO05D006332 2.2e-85 319.7 189 80.4
TPR.G23541 Trifolium pratense HOM05D005531 ORTHO05D006332 2.2e-85 319.7 189 80.4
CsaV3_4G029900 Cucumis sativus L. HOM05D005531 ORTHO05D006332 4.9e-85 318.5 255 65.1
Hund12388 Selenicereus undatus HOM05D005531 ORTHO05D006332 3.2e-84 315.8 186 80.1
Medtr4g087250 Medicago truncatula HOM05D005531 ORTHO05D006332 7.1e-84 314.7 191 79.6
Aa31LG10G7090 Aethionema arabicum HOM05D005531 ORTHO05D006332 1.2e-83 313.9 194 78.9
Sp5g10250 Schrenkiella parvula HOM05D005531 ORTHO05D006332 1.0e-82 310.8 189 80.4
Potri.013G125700 Populus trichocarpa HOM05D005531 ORTHO05D006332 1.3e-82 310.5 235 66.8
arahy.Tifrunner.gnm1.ann1.6AY0JN Arachis hypogaea HOM05D005531 ORTHO05D006332 1.7e-82 310.1 189 80.4
Prupe.1G206500 Prunus persica HOM05D005531 ORTHO05D006332 2.3e-82 309.7 239 68.2
MBI08_g25563_MAGBIO Magnolia biondii HOM05D005531 ORTHO05D006332 3.9e-82 308.9 246 64.2
PGR042G0031 Punica granatum HOM05D005531 ORTHO05D006332 5.1e-82 308.5 282 59.6
Sed0016017 Sechium edule HOM05D005531 ORTHO05D006332 6.6e-82 308.1 186 81.2
A09p45110 Brassica napus HOM05D005531 ORTHO05D006332 3.3e-81 305.8 185 80.0
BcaNung06967 Brassica carinata HOM05D005531 ORTHO05D006332 4.3e-81 305.4 185 79.5
C08p27300 Brassica napus HOM05D005531 ORTHO05D006332 4.3e-81 305.4 185 79.5
Rhsim02G0083700 Rhododendron simsii HOM05D005531 ORTHO05D006332 4.3e-81 305.4 338 53.0
AL5G32590 Arabidopsis lyrata HOM05D005531 ORTHO05D006332 4.7e-80 302.0 185 78.9
AT3G52050 Arabidopsis thaliana HOM05D005531 ORTHO05D006332 4.7e-80 302.0 185 78.9
DCAR_028442 Daucus carota HOM05D005531 ORTHO05D006332 1.1e-79 300.8 247 64.4
CDE07G1035 Ceratophyllum demersum HOM05D005531 ORTHO05D006332 1.4e-79 300.4 241 62.7
Aqoxy1G02291 Aquilegia oxysepala HOM05D005531 ORTHO05D006332 3.1e-79 299.3 220 65.9
CANSAT54G2817 Cannabis sativa HOM05D005531 ORTHO05D006332 4.0e-79 298.9 259 63.3
BcaB01g00451 Brassica carinata HOM05D005531 ORTHO05D006332 6.8e-79 298.1 180 80.0
Os03g0227300 Oryza sativa ssp. japonica HOM05D005531 ORTHO05D006332 1.2e-78 297.4 202 70.8
BraA09t39972Z Brassica rapa HOM05D005531 ORTHO05D006332 2.0e-78 296.6 191 77.0
Glyma.07G208400 Glycine max HOM05D005531 ORTHO05D006332 2.0e-78 296.6 192 76.0
Migut.N03071 Erythranthe guttata HOM05D005531 ORTHO05D006332 3.4e-78 295.8 233 63.9
Duzib151G0770 Durio zibethinus HOM05D005531 ORTHO05D006332 4.4e-78 295.4 260 59.6
Carub.0005s1837 Capsella rubella HOM05D005531 ORTHO05D006332 5.8e-78 295.0 190 75.3
BolC8t50347H Brassica oleracea HOM05D005531 ORTHO05D006332 2.2e-77 293.1 195 75.4
Psat7g121280 Pisum sativum HOM05D005531 ORTHO05D006332 2.9e-77 292.7 187 77.5
Nn7g37674 Nelumbo nucifera HOM05D005531 ORTHO05D006332 1.9e-76 290.0 194 74.7
Thhalv10010410m.g Eutrema salsugineum HOM05D005531 ORTHO05D006332 2.4e-76 289.7 185 78.4
arahy.Tifrunner.gnm1.ann1.77ZG52 Arachis hypogaea HOM05D005531 ORTHO05D006332 1.3e-74 283.9 189 76.2
HPP92_024943 Vanilla planifolia HOM05D005531 ORTHO05D006332 2.3e-74 283.1 191 69.6
ATR0743G039 Amborella trichopoda HOM05D005531 ORTHO05D006332 1.2e-72 277.3 219 62.1
PSO675G8407 Papaver somniferum HOM05D005531 ORTHO05D006332 5.2e-71 271.9 249 55.4
Sabra13G0104500 Salix brachista HOM05D005531 ORTHO05D006332 2.6e-70 269.6 310 49.4
PSO017G5810 Papaver somniferum HOM05D005531 ORTHO05D006332 1.7e-69 266.9 236 58.9
SEGI_01886 Sequoiadendron giganteum HOM05D005531 ORTHO05D006332 2.1e-67 260.0 186 67.2
EL10Ac3g06068 Beta vulgaris HOM05D005531 ORTHO05D006332 1.5e-65 253.8 287 51.9
HPP92_024926 Vanilla planifolia HOM05D005531 ORTHO05D006332 2.5e-65 253.1 180 68.3
PSO675G6185 Papaver somniferum HOM05D005531 ORTHO05D006332 1.4e-60 237.3 273 49.1
Oeu016608.2 Olea europaea HOM05D005531 ORTHO05D006332 4.0e-55 219.2 123 87.8
SMO232G0046 Selaginella moellendorffii HOM05D005531 ORTHO05D006332 7.6e-54 214.9 185 55.7
Peaxi162Scf00568g00522 Petunia axillaris HOM05D005531 ORTHO05D006332 1.6e-51 207.2 155 70.3
Ciclev10021434m.g Citrus clementina HOM05D005531 ORTHO05D006332 2.7e-51 206.5 117 83.8
Zm00001eb399280 Zea mays HOM05D005531 ORTHO05D006332 1.3e-50 204.1 128 76.6
Pp3c16_17520 Physcomitrium patens HOM05D005531 ORTHO05D006332 3.1e-47 193.0 221 45.7
AagrBONN_evm.TU.Sc2ySwM_228.5815 Anthoceros agrestis HOM05D005531 ORTHO05D006332 3.2e-44 183.0 184 51.1
AagrBONN_evm.TU.Sc2ySwM_228.1809 Anthoceros agrestis HOM05D005531 ORTHO05D006332 5.5e-44 182.2 188 50.0
PSO017G4245 Papaver somniferum HOM05D005531 ORTHO05D006332 9.3e-44 181.4 113 75.2
QL10p054586 Quercus lobata HOM05D005531 ORTHO05D006332 4.6e-43 179.1 98 88.8
QL93p1902_0778 Quercus lobata HOM05D005531 ORTHO05D006332 4.6e-43 179.1 98 88.8
Haze_01370 Corylus avellana HOM05D005531 ORTHO05D006332 1.1e-41 174.5 98 86.7
Mapoly0001s0155 Marchantia polymorpha HOM05D005531 ORTHO05D006332 4.1e-39 166.0 189 48.1
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 4.5e-38 162.5 145 62.8
Sabra13G0105100 Salix brachista HOM05D005531 ORTHO05D006332 1.7e-37 160.6 99 80.8
AUR62002375 Chenopodium quinoa HOM05D005531 ORTHO05D006332 6.5e-37 158.7 92 83.7
AUR62023806 Chenopodium quinoa HOM05D005531 ORTHO05D006332 8.4e-37 158.3 90 85.6
HPP92_024946 Vanilla planifolia HOM05D005531 ORTHO05D006332 1.6e-32 144.1 88 78.4
ClCG04G002830 Citrullus lanatus HOM05D005531 ORTHO05D006332 2.8e-32 143.3 135 58.5
QL93p1902_0765 Quercus lobata HOM05D005531 ORTHO05D006332 3.7e-32 142.9 141 53.2
QL10p054599 Quercus lobata HOM05D005531 ORTHO05D006332 2.4e-31 140.2 142 53.5
BolC7t45193H Brassica oleracea HOM05D005531 ORTHO05D006332 9.0e-31 138.3 102 65.7
Cpa.g.sc9.359 Carica papaya HOM05D005531 ORTHO05D006332 7.7e-30 135.2 140 53.6
unitig_0.g2525 Utricularia gibba HOM05D005531 ORTHO05D006332 1.7e-29 134.0 175 45.7
CARHR161680 Cardamine hirsuta HOM05D005531 ORTHO05D006332 1.4e-28 131.0 82 75.6
MD17G1177600 Malus domestica HOM05D005531 ORTHO05D006332 2.7e-27 126.7 79 74.7
Sabra13G0104900 Salix brachista HOM05D001493 ORTHO05D006332 6.1e-27 125.6 82 79.3
C07p46750 Brassica napus HOM05D005531 ORTHO05D006332 1.5e-25 120.9 102 60.8
Nitab4.5_0005427g0050 Nicotiana tabacum HOM05D005531 ORTHO05D006332 4.3e-25 119.4 58 96.6
Cpa.g.sc9.358 Carica papaya HOM05D005531 ORTHO05D006332 2.2e-24 117.1 63 93.7
Ah.14g081000 Amaranthus hybridus HOM05D005531 ORTHO05D006332 1.4e-23 114.4 131 51.9
MCO14G121 Micromonas commoda HOM05D005531 ORTHO05D006332 3.1e-23 113.2 179 36.9
CBR_g41469 Chara braunii HOM05D000019 ORTHO05D009492 4.5e-22 109.4 103 51.5
Nitab4.5_0005427g0020 Nicotiana tabacum HOM05D005531 ORTHO05D006332 5.9e-22 109.0 67 86.6
MD17G1177500 Malus domestica HOM05D005531 ORTHO05D006332 1.3e-21 107.8 95 62.1
VMungo0251G0293 Vigna mungo HOM05D005531 ORTHO05D006332 3.8e-21 106.3 76 67.1
PSO017G1590 Papaver somniferum HOM05D005531 ORTHO05D006332 2.6e-17 93.6 91 51.6
CARHR161690 Cardamine hirsuta HOM05D005531 ORTHO05D006332 7.0e-15 85.5 61 68.9
Solyc03g062930.3 Solanum lycopersicum HOM05D005531 ORTHO05D006332 1.2e-11 74.7 37 100.0
PRCOL_00004663 Prasinoderma coloniale HOM05D005531 ORTHO05D006332 1.0e-10 71.6 163 28.2
Haze_01368 Corylus avellana HOM05D005531 ORTHO05D006332 2.6e-09 67.0 88 40.9
Ca_14000_v3 Cicer arietinum L. HOM05D005981 ORTHO05D007551 7.5e-09 65.5 100 36.0
Oeu021010.1 Olea europaea HOM05D005981 ORTHO05D007551 1.3e-08 64.7 120 30.8
Lsat_1_v5_gn_1_10481 Lactuca sativa HOM05D005981 ORTHO05D007551 4.8e-08 62.8 96 34.4
Psat1g098600 Pisum sativum HOM05D005981 ORTHO05D007551 4.8e-08 62.8 103 33.0
BcaC08g43776 Brassica carinata HOM05D005981 ORTHO05D007551 6.3e-08 62.4 90 35.6
BolC6t36287H Brassica oleracea HOM05D005981 ORTHO05D007551 6.3e-08 62.4 90 35.6
THA.LOC104806782 Tarenaya hassleriana HOM05D005981 ORTHO05D007551 6.3e-08 62.4 94 37.2
arahy.Tifrunner.gnm1.ann1.SEU8EV Arachis hypogaea HOM05D005981 ORTHO05D007551 8.2e-08 62.0 103 32.0
arahy.Tifrunner.gnm1.ann1.VB64T6 Arachis hypogaea HOM05D005981 ORTHO05D007551 8.2e-08 62.0 103 32.0
C06p11540 Brassica napus HOM05D005981 ORTHO05D007551 8.2e-08 62.0 90 35.6
A09p32090 Brassica napus HOM05D005981 ORTHO05D007551 1.1e-07 61.6 90 35.6
BraA09t38748Z Brassica rapa HOM05D005981 ORTHO05D007551 1.1e-07 61.6 90 35.6
EL10Ac1g00070 Beta vulgaris HOM05D005981 ORTHO05D007551 1.4e-07 61.2 153 31.4
BcaB07g33127 Brassica carinata HOM05D005981 ORTHO05D007551 1.4e-07 61.2 90 35.6
Medtr6g033525 Medicago truncatula HOM05D005981 ORTHO05D007551 1.4e-07 61.2 102 33.3
Aqoxy5G02601 Aquilegia oxysepala HOM05D005981 ORTHO05D007551 1.8e-07 60.8 99 32.3
MELO3C008115.2 Cucumis melo HOM05D005981 ORTHO05D007551 1.8e-07 60.8 189 25.9
Os01g0874800 Oryza sativa ssp. japonica HOM05D005981 ORTHO05D007551 1.8e-07 60.8 91 36.3
AL1G48940 Arabidopsis lyrata HOM05D005981 ORTHO05D007551 2.4e-07 60.5 90 35.6
Thhalv10008072m.g Eutrema salsugineum HOM05D005981 ORTHO05D007551 2.4e-07 60.5 90 36.7
Glyma.16G156300 Glycine max HOM05D005981 ORTHO05D007551 2.4e-07 60.5 103 33.0
Aa31LG6G8450 Aethionema arabicum HOM05D005981 ORTHO05D007551 4.1e-07 59.7 89 37.1
Carub.0001s3253 Capsella rubella HOM05D005981 ORTHO05D007551 4.1e-07 59.7 90 34.4
CsaV3_2G033430 Cucumis sativus L. HOM05D005981 ORTHO05D007551 4.1e-07 59.7 101 34.7
Sp1g29600 Schrenkiella parvula HOM05D005981 ORTHO05D007551 4.1e-07 59.7 90 35.6
CARHR033840 Cardamine hirsuta HOM05D005981 ORTHO05D007551 5.3e-07 59.3 90 35.6
ClCG11G008230 Citrullus lanatus HOM05D005981 ORTHO05D007551 5.3e-07 59.3 101 32.7
Phvul.004G084494 Phaseolus vulgaris HOM05D005981 ORTHO05D007551 9.1e-07 58.5 102 33.3
CANSAT56G4197 Cannabis sativa HOM05D005981 ORTHO05D007551 1.2e-06 58.2 92 32.6
Zm00001eb146190 Zea mays HOM05D005981 ORTHO05D007551 1.2e-06 58.2 91 35.2
AT1G34380 Arabidopsis thaliana HOM05D005981 ORTHO05D007551 1.6e-06 57.8 90 34.4
Sed0004103 Sechium edule HOM05D005981 ORTHO05D007551 1.6e-06 57.8 96 33.3
TPR.G36660 Trifolium pratense HOM05D005981 ORTHO05D007551 1.6e-06 57.8 97 33.0
AUR62023576 Chenopodium quinoa HOM05D005981 ORTHO05D007551 2.0e-06 57.4 102 35.3
Lj2g0016315 Lotus japonicus HOM05D005981 ORTHO05D007551 2.7e-06 57.0 103 32.0
SMO308G0008 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 2.7e-06 57.0 96 38.5
SGA_v2.0_scaffold118G32466 Striga asiatica HOM05D005981 ORTHO05D007551 2.7e-06 57.0 96 31.2
HPP92_000088 Vanilla planifolia HOM05D005981 ORTHO05D007551 2.7e-06 57.0 101 35.6
PGR119G0141 Punica granatum HOM05D005981 ORTHO05D007551 3.5e-06 56.6 103 31.1
Migut.C01243 Erythranthe guttata HOM05D005981 ORTHO05D007551 4.5e-06 56.2 99 32.3
Pp3c1_23520 Physcomitrium patens HOM05D005981 ORTHO05D007551 4.5e-06 56.2 104 32.7
Hund27079 Selenicereus undatus HOM05D005981 ORTHO05D007551 4.5e-06 56.2 102 33.3
Solyc11g017230.2 Solanum lycopersicum HOM05D005981 ORTHO05D007551 4.5e-06 56.2 104 31.7
Sopen11g009130 Solanum pennellii HOM05D005981 ORTHO05D007551 4.5e-06 56.2 104 31.7
DCAR_023098 Daucus carota HOM05D005981 ORTHO05D007551 5.9e-06 55.8 102 30.4
MD10G1046800 Malus domestica HOM05D005981 ORTHO05D007551 5.9e-06 55.8 92 35.9
Manes.18G100000 Manihot esculenta HOM05D005981 ORTHO05D007551 5.9e-06 55.8 96 32.3
Prupe.8G055700 Prunus persica HOM05D005981 ORTHO05D007551 5.9e-06 55.8 93 33.3
RcHm_v2.0_Chr6g0272141 Rosa chinensis HOM05D005981 ORTHO05D007551 5.9e-06 55.8 93 34.4
Thecc.08G202800 Theobroma cacao HOM05D005981 ORTHO05D007551 5.9e-06 55.8 94 31.9
SMO271G0041 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 7.7e-06 55.5 96 37.5
GSVIVG01034499001 Vitis vinifera HOM05D005981 ORTHO05D007551 7.7e-06 55.5 98 28.6


User provided reference genes

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