Gene: AT3G52050

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G52050
  • Transcript Identifier AT3G52050.2
  • Gene Type Coding gene
  • Location Chr3 : 19305228-19309398 : positive

Gene Family Information

  • ID HOM05D005531
  • #Genes/#Species 139/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G52050.2
  • uniprot Q147H2

Descriptions

  • Description 5'-3' exonuclease family protein
  • Computational description 5'-3' exonuclease family protein; FUNCTIONS IN: 5'-3' exonuclease activity, DNA binding, catalytic activity; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: 5'-3' exonuclease, SAM-fold domain (InterPro:IPR020047), 5'-3' exonuclease, N-terminal (InterPro:IPR002421), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), 5'-3' exonuclease, N-terminal resolvase-like domain (InterPro:IPR020046), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G34380.2); Has 9747 Blast hits to 9742 proteins in 2555 species: Archae - 3; Bacteria - 6179; Metazoa - 6; Fungi - 13; Plants - 105; Viruses - 31; Other Eukaryotes - 3410 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006261
IEA
Gene OntologyDNA-dependent DNA replication
GO:0006261
IEA
InterProDNA-dependent DNA replication
GO:0006302
IBA
Gene Ontologydouble-strand break repair1
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0071897
IEA
GOA DatabaseDNA biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003887
IBA
IEA
Gene OntologyDNA-directed DNA polymerase activity1
GO:0003887
IEA
InterProDNA-directed DNA polymerase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR008918 Helix-hairpin-helix motif, class 2
IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal
IPR020045 DNA polymerase I-like, H3TH domain
IPR002298 DNA polymerase A
IPR002421 5'-3' exonuclease
IPR036279 5'-3' exonuclease, C-terminal domain superfamily
IPR029060 PIN-like domain superfamily
Mapman id Description
13.5.6.2 Cell cycle organisation.organellar DNA replication.RNA primer removal.mitochondrial RNA exonuclease