Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 1.9e-231 805.4 393 100.0
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 2.2e-208 728.8 419 86.9
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.4e-189 666.4 372 86.3
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 2.6e-188 662.1 359 90.5
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 5.7e-188 661.0 372 85.5
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 3.6e-182 641.7 350 88.6
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 8.1e-158 560.8 365 71.2
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 8.9e-157 557.4 377 70.6
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 2.1e-153 546.2 367 69.5
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.7e-152 543.1 367 69.8
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 6.9e-149 531.2 371 70.1
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 3.4e-148 528.9 377 66.8
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 4.2e-146 521.9 363 68.3
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 9.6e-143 510.8 366 66.7
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 2.4e-141 506.1 358 67.0
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 4.0e-141 505.4 443 58.0
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.1e-138 497.3 358 64.5
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.9e-138 496.5 372 61.8
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.6e-137 493.4 359 64.6
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 1.6e-137 493.4 359 63.8
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 4.6e-137 491.9 360 71.1
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 1.8e-136 490.0 360 63.6
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 2.3e-136 489.6 360 65.0
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 8.7e-136 487.6 366 62.0
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.1e-135 487.3 358 63.4
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.5e-135 486.9 366 61.5
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.5e-135 486.9 366 61.5
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.9e-135 486.5 358 64.5
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.9e-135 486.5 358 63.7
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 2.5e-135 486.1 359 64.6
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 4.3e-135 485.3 358 63.7
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.3e-134 483.8 490 52.2
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 2.1e-134 483.0 360 64.7
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 3.6e-134 482.3 363 63.9
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.8e-133 479.9 364 64.3
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 2.4e-133 479.6 360 63.1
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.1e-133 479.2 390 58.5
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 4.0e-133 478.8 362 63.0
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 9.0e-133 477.6 358 63.1
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.5e-132 476.9 357 62.5
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.5e-132 476.9 358 62.6
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.5e-132 476.9 331 68.9
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 2.0e-132 476.5 356 64.9
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 4.5e-132 475.3 363 61.7
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 5.8e-132 474.9 357 65.0
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 5.8e-132 474.9 373 60.1
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 7.6e-132 474.6 355 64.8
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 9.9e-132 474.2 362 62.7
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 9.9e-132 474.2 359 63.8
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.7e-131 473.4 361 61.5
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.9e-131 472.6 372 59.9
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 3.8e-131 472.2 365 62.2
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 3.8e-131 472.2 359 61.3
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.4e-130 470.3 360 60.8
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.4e-130 470.3 359 61.6
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 3.2e-130 469.2 359 61.6
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 3.2e-130 469.2 364 61.5
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 5.5e-130 468.4 358 60.3
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.2e-129 467.2 358 62.0
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 2.7e-129 466.1 357 61.1
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 6.0e-129 464.9 370 61.1
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 6.0e-129 464.9 358 60.9
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 7.9e-129 464.5 359 61.0
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.1e-127 460.7 353 61.8
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 4.3e-127 458.8 355 60.8
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 4.3e-127 458.8 370 60.5
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 2.1e-126 456.4 376 58.5
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 2.1e-126 456.4 359 63.5
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 3.7e-126 455.7 357 60.2
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 8.1e-126 454.5 355 60.6
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 8.1e-126 454.5 355 60.6
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 3.1e-125 452.6 356 60.1
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 5.3e-125 451.8 353 63.5
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 6.9e-125 451.4 355 60.6
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.2e-124 450.7 358 62.8
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 1.5e-124 450.3 355 59.2
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 3.4e-124 449.1 330 63.3
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 5.8e-124 448.4 365 61.1
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 5.8e-124 448.4 356 59.6
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 5.8e-124 448.4 356 59.6
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 7.6e-124 448.0 356 59.3
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 1.3e-123 447.2 355 59.4
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 1.7e-123 446.8 432 52.1
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 3.8e-123 445.7 362 59.4
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 6.5e-123 444.9 369 59.3
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.1e-122 444.1 356 60.4
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.4e-122 443.7 356 60.4
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 3.2e-122 442.6 375 56.0
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 7.1e-122 441.4 356 58.7
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 7.1e-122 441.4 356 59.3
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 2.1e-121 439.9 357 59.4
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 2.3e-120 436.4 355 59.2
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 2.5e-114 416.4 310 62.9
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 5.5e-114 415.2 400 52.8
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 2.2e-110 403.3 342 55.0
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.4e-109 399.8 358 55.0
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.2e-108 397.5 363 53.7
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.4e-106 390.6 294 62.6
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 4.2e-106 389.0 367 52.9
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.6e-105 387.1 354 55.1
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 3.0e-104 382.9 360 55.0
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 1.7e-102 377.1 264 65.5
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 2.8e-102 376.3 331 57.1
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 8.2e-102 374.8 363 48.8
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.2e-99 366.7 249 68.7
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 1.9e-98 363.6 385 48.3
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 5.5e-90 335.5 427 42.2
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 2.7e-89 333.2 295 55.9
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 4.0e-88 329.3 296 56.4
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.6e-87 326.6 210 70.5
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 6.3e-86 322.0 184 76.6
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.6e-81 307.4 418 39.2
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 1.4e-80 304.3 398 39.7
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 2.7e-76 290.0 154 81.8
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 3.2e-74 283.1 365 40.3
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 4.7e-73 279.3 359 43.2
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 2.3e-64 250.4 236 53.8
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 1.5e-63 247.7 132 82.6
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.4e-61 241.1 130 77.7
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 5.8e-55 219.2 263 46.8
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 5.8e-55 219.2 263 46.8
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 8.3e-46 188.7 209 47.8
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.4e-45 188.0 209 47.8
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 2.0e-39 167.5 208 45.7
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 5.8e-39 166.0 126 54.8
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 1.7e-38 164.5 156 56.4
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 2.1e-36 157.5 83 83.1
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 2.9e-30 137.1 75 80.0
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 1.1e-24 118.6 129 49.6
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 5.4e-21 106.3 135 45.9
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.3e-19 101.7 122 48.4
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.8e-19 101.3 200 32.0
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.1e-17 94.4 102 54.9


User provided reference genes

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