Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g042990 Solanum pennellii HOM05D000246 ORTHO05D037723 8.6e-37 156.4 74 100.0
Nitab4.5_0008329g0030 Nicotiana tabacum HOM05D000246 ORTHO05D007179 1.9e-15 85.5 51 84.3
Actinidia05681 Actinidia chinensis HOM05D000246 ORTHO05D007179 2.4e-15 85.1 51 82.4
Solyc01g099460.3 Solanum lycopersicum HOM05D000246 ORTHO05D007179 2.4e-15 85.1 51 82.4
Sopen01g043000 Solanum pennellii HOM05D000246 ORTHO05D007179 2.4e-15 85.1 51 82.4
Cpa.g.sc48.83 Carica papaya HOM05D000246 ORTHO05D007179 4.2e-15 84.3 51 76.5
CSS0023091 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007179 5.4e-15 84.0 51 82.4
CSS0043712 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007179 5.4e-15 84.0 51 82.4
CAN.G1652.4 Capsicum annuum HOM05D000246 ORTHO05D007179 5.4e-15 84.0 51 82.4
Dinv40315 Davidia involucrata HOM05D000246 ORTHO05D007179 5.4e-15 84.0 51 82.4
Peaxi162Scf00037g00932 Petunia axillaris HOM05D000246 ORTHO05D007179 5.4e-15 84.0 51 82.4
Rhsim07G0187000 Rhododendron simsii HOM05D000246 ORTHO05D007179 5.4e-15 84.0 51 82.4
Glyma.20G236000 Glycine max HOM05D000246 ORTHO05D007179 7.1e-15 83.6 51 76.5
vmacro04965 Vaccinium macrocarpon HOM05D000246 ORTHO05D007179 7.1e-15 83.6 51 80.4
Nitab4.5_0002344g0100 Nicotiana tabacum HOM05D000246 ORTHO05D007179 9.3e-15 83.2 51 80.4
arahy.Tifrunner.gnm1.ann1.K95L4M Arachis hypogaea HOM05D000246 ORTHO05D007179 1.2e-14 82.8 50 80.0
Cfa006619 Carpinus fangiana HOM05D000246 ORTHO05D007179 1.6e-14 82.4 51 80.4
Ciclev10000234m.g Citrus clementina HOM05D000246 ORTHO05D007179 1.6e-14 82.4 51 78.4
Migut.B01029 Erythranthe guttata HOM05D000246 ORTHO05D007179 2.7e-14 81.6 50 80.0
Lj5A421T63 Lonicera japonica HOM05D000246 ORTHO05D007179 2.7e-14 81.6 51 78.4
Lj5A431G15 Lonicera japonica HOM05D000246 ORTHO05D007179 2.7e-14 81.6 51 78.4
QL03p011605 Quercus lobata HOM05D000246 ORTHO05D007179 2.7e-14 81.6 51 78.4
QL03p021635 Quercus lobata HOM05D000246 ORTHO05D007179 2.7e-14 81.6 51 78.4
Sc09g0003000 Simmondsia chinensis HOM05D000246 ORTHO05D007179 2.7e-14 81.6 51 76.5
MD04G1201600 Malus domestica HOM05D000246 ORTHO05D007179 3.5e-14 81.3 51 78.4
Prupe.6G321800 Prunus persica HOM05D000246 ORTHO05D007179 3.5e-14 81.3 51 78.4
CANSAT54G2417 Cannabis sativa HOM05D000246 ORTHO05D007179 4.6e-14 80.9 51 74.5
PSO210G2254 Papaver somniferum HOM05D000246 ORTHO05D007179 4.6e-14 80.9 51 74.5
Phvul.007G196600 Phaseolus vulgaris HOM05D000246 ORTHO05D007179 4.6e-14 80.9 51 74.5
EL10Ac4g09931 Beta vulgaris HOM05D000246 ORTHO05D007179 6.0e-14 80.5 51 78.4
CiPaw.08G162700 Carya illinoinensis HOM05D000246 ORTHO05D007179 6.0e-14 80.5 51 78.4
RcHm_v2.0_Chr3g0455521 Rosa chinensis HOM05D000246 ORTHO05D007179 6.0e-14 80.5 51 78.4
VMungo0720G1583 Vigna mungo HOM05D000246 ORTHO05D007179 6.0e-14 80.5 51 74.5
GSVIVG01031124001 Vitis vinifera HOM05D001472 ORTHO05D002655 6.0e-14 80.5 51 76.5
Gohir.A11G267000 Gossypium hirsutum HOM05D000246 ORTHO05D007179 7.9e-14 80.1 51 76.5
Gohir.D11G277100 Gossypium hirsutum HOM05D000246 ORTHO05D007179 7.9e-14 80.1 51 76.5
Gorai.007G299200 Gossypium raimondii HOM05D000246 ORTHO05D007179 7.9e-14 80.1 51 76.5
arahy.Tifrunner.gnm1.ann1.G0LK44 Arachis hypogaea HOM05D000246 ORTHO05D007179 1.0e-13 79.7 50 78.0
C07p41090 Brassica napus HOM05D000246 ORTHO05D007179 1.0e-13 79.7 51 72.5
BolC7t44636H Brassica oleracea HOM05D000246 ORTHO05D007179 1.0e-13 79.7 51 72.5
FAN02G0914 Fragaria x ananassa HOM05D000246 ORTHO05D007179 1.0e-13 79.7 51 78.4
HanXRQChr03g0072511 Helianthus annuus HOM05D000246 ORTHO05D007179 1.0e-13 79.7 51 76.5
Lsat_1_v5_gn_9_123801 Lactuca sativa HOM05D000246 ORTHO05D007179 1.0e-13 79.7 51 78.4
RcHm_v2.0_Chr6g0295551 Rosa chinensis HOM05D000246 ORTHO05D007179 1.0e-13 79.7 51 78.4
TPR.G6096 Trifolium pratense HOM05D000246 ORTHO05D007179 1.0e-13 79.7 50 78.0
Atru.chr2.19 Acer truncatum HOM05D000246 ORTHO05D007179 1.3e-13 79.3 51 76.5
Haze_04155 Corylus avellana HOM05D000246 ORTHO05D007179 1.3e-13 79.3 51 78.4
A06p37370 Brassica napus HOM05D000246 ORTHO05D007179 1.8e-13 79.0 51 70.6
BraA06t26661Z Brassica rapa HOM05D000246 ORTHO05D007179 1.8e-13 79.0 51 70.6
ClCG02G015470 Citrullus lanatus HOM05D000246 ORTHO05D007179 1.8e-13 79.0 50 76.0
MELO3C004226.2 Cucumis melo HOM05D000246 ORTHO05D007179 1.8e-13 79.0 50 76.0
CsaV3_2G006600 Cucumis sativus L. HOM05D000246 ORTHO05D007179 1.8e-13 79.0 50 76.0
ECA240G0991 Erigeron canadensis HOM05D000246 ORTHO05D007179 1.8e-13 79.0 50 76.0
Oeu012115.1 Olea europaea HOM05D000246 ORTHO05D007179 1.8e-13 79.0 50 78.0
Sed0014533 Sechium edule HOM05D000246 ORTHO05D007179 1.8e-13 79.0 50 76.0
MBI19_g30059_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D007179 2.3e-13 78.6 51 72.5
Thecc.05G311900 Theobroma cacao HOM05D000246 ORTHO05D007179 2.3e-13 78.6 50 78.0
TAR633G0108 Trochodendron aralioides HOM05D000246 ORTHO05D007179 2.3e-13 78.6 51 72.5
Aqoxy2G03005 Aquilegia oxysepala HOM05D000246 ORTHO05D007179 3.0e-13 78.2 50 74.0
AUR62005191 Chenopodium quinoa HOM05D000246 ORTHO05D007179 3.0e-13 78.2 51 74.5
FAN05G3600 Fragaria x ananassa HOM05D000246 ORTHO05D007179 3.0e-13 78.2 51 76.5
Lalb_Chr21g0310611 Lupinus albus HOM05D000246 ORTHO05D007179 3.0e-13 78.2 51 76.5
Manes.08G118800 Manihot esculenta HOM05D000246 ORTHO05D007179 3.0e-13 78.2 51 74.5
CDE01G0252 Ceratophyllum demersum HOM05D000246 ORTHO05D007179 3.9e-13 77.8 56 66.1
Cc00_g10440 Coffea canephora HOM05D000246 ORTHO05D007179 3.9e-13 77.8 51 74.5
FvH4_6g06440 Fragaria vesca HOM05D000246 ORTHO05D007179 3.9e-13 77.8 51 74.5
FAN14G0626 Fragaria x ananassa HOM05D000246 ORTHO05D007179 3.9e-13 77.8 51 74.5
PSO170G0679 Papaver somniferum HOM05D000246 ORTHO05D007179 3.9e-13 77.8 51 72.5
Sabra05G0031700 Salix brachista HOM05D000359 ORTHO05D007179 3.9e-13 77.8 51 76.5
Thhalv10003644m.g Eutrema salsugineum HOM05D000246 ORTHO05D007179 5.1e-13 77.4 51 70.6
TWI56G0873 Tripterygium wilfordii HOM05D000246 ORTHO05D007179 5.1e-13 77.4 51 72.5
AL6G39350 Arabidopsis lyrata HOM05D000246 ORTHO05D007179 6.7e-13 77.0 51 70.6
AT5G27680 Arabidopsis thaliana HOM05D000246 ORTHO05D007179 6.7e-13 77.0 51 70.6
Carub.0006s2490 Capsella rubella HOM05D000246 ORTHO05D007179 6.7e-13 77.0 51 70.6
AUR62000778 Chenopodium quinoa HOM05D000246 ORTHO05D007179 6.7e-13 77.0 51 74.5
Eucgr.H04508 Eucalyptus grandis HOM05D000246 ORTHO05D007179 6.7e-13 77.0 50 74.0
Eucgr.L01167 Eucalyptus grandis HOM05D000246 ORTHO05D007179 6.7e-13 77.0 50 74.0
Ca_10124_v3 Cicer arietinum L. HOM05D000246 ORTHO05D007179 8.7e-13 76.6 51 74.5
Nn3g21421 Nelumbo nucifera HOM05D000246 ORTHO05D007179 8.7e-13 76.6 51 70.6
CARHR186200 Cardamine hirsuta HOM05D000246 ORTHO05D007179 1.5e-12 75.9 51 68.6
Zm00001eb354210 Zea mays HOM05D000246 ORTHO05D007179 1.5e-12 75.9 51 72.5
Os05g0150600 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D007179 1.9e-12 75.5 51 70.6
Solyc01g099500.1 Solanum lycopersicum HOM05D000246 ORTHO05D037723 1.9e-12 75.5 51 74.5
Medtr1g083250 Medicago truncatula HOM05D000246 ORTHO05D007179 2.5e-12 75.1 50 72.0
PGR031G3950 Punica granatum HOM05D000246 ORTHO05D007179 2.5e-12 75.1 51 70.6
Eucgr.F00584 Eucalyptus grandis HOM05D000246 ORTHO05D007179 3.3e-12 74.7 65 58.5
Sp2g20840 Schrenkiella parvula HOM05D000246 ORTHO05D007179 3.3e-12 74.7 50 70.0
Hund21703 Selenicereus undatus HOM05D000246 ORTHO05D007179 3.3e-12 74.7 51 70.6
Potri.005G026400 Populus trichocarpa HOM05D000246 ORTHO05D007179 4.3e-12 74.3 51 72.5
Psat6g150320 Pisum sativum HOM05D000246 ORTHO05D007179 5.6e-12 73.9 50 72.0
ATR0210G017 Amborella trichopoda HOM05D000246 ORTHO05D007179 7.4e-12 73.6 50 68.0
Lj5g0018456 Lotus japonicus HOM05D000246 ORTHO05D007179 9.6e-12 73.2 51 68.6
Aa31LG11G9420 Aethionema arabicum HOM05D000246 ORTHO05D007179 1.3e-11 72.8 51 68.6
Sopen01g043020 Solanum pennellii HOM05D000246 ORTHO05D037723 1.3e-11 72.8 50 74.0
DCAR_003347 Daucus carota HOM05D000246 ORTHO05D007179 2.1e-11 72.0 50 66.0
SEGI_40367 Sequoiadendron giganteum HOM05D000246 ORTHO05D007179 2.8e-11 71.6 51 68.6
SHI18109 Sapria himalayana HOM05D000246 ORTHO05D007179 1.4e-10 69.3 51 68.6
Pp3c20_2130 Physcomitrium patens HOM05D000246 ORTHO05D007179 9.0e-10 66.6 51 60.8
Solyc02g088430.1 Solanum lycopersicum HOM05D000246 ORTHO05D007179 2.0e-09 65.5 54 61.1
Pp3c23_17960 Physcomitrium patens HOM05D000246 ORTHO05D007179 7.6e-09 63.5 51 56.9
HPP92_010689 Vanilla planifolia HOM05D000246 ORTHO05D007179 2.5e-07 58.5 43 62.8
COL.COLO4_10505 Corchorus olitorius HOM05D000246 ORTHO05D007179 7.1e-07 57.0 39 66.7
Cre12.g490150 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D009140 6.0e-06 53.9 50 54.0


User provided reference genes

Program Settings