Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 1.3e-117 426.4 217 100.0
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.9e-100 369.4 216 89.8
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 6.1e-91 337.8 220 81.8
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.9e-52 209.9 256 53.5
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 2.1e-51 206.5 256 53.1
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.5e-49 200.3 265 51.3
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 1.5e-49 200.3 265 51.3
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 2.0e-49 199.9 265 50.9
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 3.4e-49 199.1 265 50.9
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.3e-43 180.6 259 47.5
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 3.6e-43 179.1 255 47.8
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 6.2e-43 178.3 255 47.5
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 6.2e-43 178.3 208 53.4
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 8.1e-43 177.9 259 48.3
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 8.1e-43 177.9 260 48.1
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 8.1e-43 177.9 255 47.8
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 1.4e-42 177.2 258 46.1
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 1.8e-42 176.8 267 44.9
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 2.4e-42 176.4 269 46.1
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 2.4e-42 176.4 259 44.4
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 2.4e-42 176.4 259 44.4
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 3.1e-42 176.0 253 47.0
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 3.1e-42 176.0 263 45.2
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 3.1e-42 176.0 259 44.4
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 3.1e-42 176.0 153 64.7
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 4.0e-42 175.6 257 47.5
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 5.3e-42 175.3 255 45.9
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 5.3e-42 175.3 254 48.4
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 6.9e-42 174.9 256 48.4
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 6.9e-42 174.9 251 46.2
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 9.0e-42 174.5 261 46.4
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 9.0e-42 174.5 251 48.2
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 9.0e-42 174.5 251 49.0
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 1.2e-41 174.1 255 47.1
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 1.5e-41 173.7 255 47.1
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 1.5e-41 173.7 261 44.4
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 2.0e-41 173.3 257 47.5
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 2.0e-41 173.3 251 45.8
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 2.6e-41 172.9 257 45.5
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 2.6e-41 172.9 257 45.5
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 4.5e-41 172.2 256 46.5
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 4.5e-41 172.2 252 44.8
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 5.8e-41 171.8 261 44.8
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 5.8e-41 171.8 271 42.8
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 5.8e-41 171.8 211 51.2
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 7.6e-41 171.4 198 54.0
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 9.9e-41 171.0 263 46.0
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 9.9e-41 171.0 255 45.1
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 9.9e-41 171.0 255 45.1
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 9.9e-41 171.0 256 45.7
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 1.3e-40 170.6 196 53.1
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 1.3e-40 170.6 196 53.1
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 1.3e-40 170.6 261 44.4
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 1.3e-40 170.6 256 45.3
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 1.7e-40 170.2 260 45.8
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 3.8e-40 169.1 256 46.1
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 4.9e-40 168.7 271 42.1
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 4.9e-40 168.7 215 50.2
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 6.4e-40 168.3 255 44.7
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 6.4e-40 168.3 256 45.3
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 8.4e-40 167.9 268 44.0
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 8.4e-40 167.9 255 47.1
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 1.4e-39 167.2 256 46.1
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 1.4e-39 167.2 256 46.1
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.4e-39 167.2 254 44.9
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 3.2e-39 166.0 220 47.3
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 5.5e-39 165.2 257 46.3
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 9.3e-39 164.5 255 45.1
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 1.6e-38 163.7 242 46.3
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 2.1e-38 163.3 206 50.0
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 2.1e-38 163.3 249 45.4
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 2.7e-38 162.9 261 42.9
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 2.7e-38 162.9 261 42.9
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 2.7e-38 162.9 242 45.9
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 4.6e-38 162.2 266 41.0
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 4.6e-38 162.2 253 44.7
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 7.9e-38 161.4 266 40.6
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 3.0e-37 159.5 211 47.4
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 5.1e-37 158.7 287 41.5
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 5.1e-37 158.7 253 43.1
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 8.7e-37 157.9 191 50.8
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 2.5e-36 156.4 285 42.1
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 5.6e-36 155.2 286 40.6
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 7.4e-36 154.8 189 52.4
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 9.6e-36 154.5 193 50.3
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 9.6e-36 154.5 262 43.1
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 9.6e-36 154.5 263 43.3
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 9.6e-36 154.5 196 46.9
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 1.3e-35 154.1 205 48.3
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 1.3e-35 154.1 263 43.3
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.6e-35 153.7 208 48.6
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 2.1e-35 153.3 288 39.6
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.7e-35 152.5 262 43.1
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 4.8e-35 152.1 269 39.4
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 1.1e-34 151.0 274 42.3
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 2.4e-34 149.8 263 42.6
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.1e-34 149.4 271 41.3
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 3.1e-34 149.4 261 42.1
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 4.0e-34 149.1 209 47.8
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 4.0e-34 149.1 262 40.5
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 6.9e-34 148.3 210 47.6
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.5e-33 147.1 264 42.4
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 1.5e-33 147.1 191 48.2
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 7.6e-33 144.8 251 40.6
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 1.3e-32 144.1 232 44.4
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 1.7e-32 143.7 199 46.7
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 2.2e-32 143.3 194 47.4
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 8.4e-32 141.4 254 41.7
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 8.4e-32 141.4 174 52.3
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 2.5e-31 139.8 188 45.2
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 4.2e-31 139.0 150 59.3
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 5.5e-31 138.7 201 45.8
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 5.5e-31 138.7 217 42.9
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 4.6e-30 135.6 122 60.7
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 1.8e-29 133.7 150 58.0
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 3.9e-29 132.5 254 41.3
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 6.7e-29 131.7 254 40.9
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 6.7e-29 131.7 254 40.9
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 8.7e-29 131.3 252 40.1
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 7.4e-28 128.3 229 39.3
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 7.4e-28 128.3 229 39.3
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 8.2e-27 124.8 154 48.1
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 3.1e-26 122.9 146 50.0
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 4.1e-26 122.5 179 45.3
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 7.2e-23 111.7 166 45.2
CAN.G1652.14 Capsicum annuum HOM05D003241 ORTHO05D003812 1.0e-21 107.8 116 56.0
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 3.3e-20 102.8 159 44.7
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 1.6e-19 100.5 162 41.4
Migut.N01793 Erythranthe guttata HOM05D003241 ORTHO05D003812 5.3e-18 95.5 133 45.9
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 2.6e-17 93.2 137 44.5
Eucgr.L02270 Eucalyptus grandis HOM05D001083 ORTHO05D003812 3.4e-17 92.8 87 58.6
Actinidia21372 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.0e-16 91.3 133 44.4
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 1.0e-16 91.3 158 38.6
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 2.9e-16 89.7 214 34.1
Aa31LG8G1930 Aethionema arabicum HOM05D003241 ORTHO05D000015 5.0e-16 89.0 100 53.0
Atru.chr1.2009 Acer truncatum HOM05D003241 ORTHO05D003812 1.1e-15 87.8 124 42.7
RcHm_v2.0_Chr7g0234901 Rosa chinensis HOM05D003241 ORTHO05D003812 9.4e-15 84.7 149 41.6
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 4.6e-14 82.4 95 47.4
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 6.1e-14 82.0 138 39.9
Thhalv10022422m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 7.9e-14 81.6 129 39.5
AL3G27010 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 2.3e-13 80.1 151 33.8
Lju445A0T13 Lonicera japonica HOM05D003241 ORTHO05D003812 2.3e-13 80.1 107 47.7
Hma1.2p1_0765F.1_g215090 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 3.0e-13 79.7 83 54.2
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 5.1e-13 79.0 165 39.4
AT3G14700 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 6.7e-13 78.6 138 34.8
BcaC05g29043 Brassica carinata HOM05D003241 ORTHO05D003812 6.7e-13 78.6 150 38.7
A05p34740 Brassica napus HOM05D003241 ORTHO05D003812 6.7e-13 78.6 131 40.5
Hma1.2p1_0358F.1_g134820 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 6.7e-13 78.6 83 54.2
BcaB06g25362 Brassica carinata HOM05D003241 ORTHO05D003812 8.8e-13 78.2 136 40.4
C05p52560 Brassica napus HOM05D003241 ORTHO05D003812 8.8e-13 78.2 134 38.8
Haze_08784 Corylus avellana HOM05D003241 ORTHO05D003812 8.8e-13 78.2 78 53.8
SMO111G0075 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 8.8e-13 78.2 125 39.2
BraA05t22289Z Brassica rapa HOM05D003241 ORTHO05D003812 1.1e-12 77.8 128 42.2
SMO351G0236 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 5.7e-12 75.5 95 44.2
SMO111G0085 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 7.4e-12 75.1 119 38.7
Rhsim06G0183100 Rhododendron simsii HOM05D003241 ORTHO05D003812 9.7e-12 74.7 106 45.3
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 1.7e-11 73.9 94 47.9
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 1.7e-11 73.9 152 37.5
MD07G1289000 Malus domestica HOM05D003241 ORTHO05D003812 3.7e-11 72.8 166 32.5
Rhsim06G0182100 Rhododendron simsii HOM05D003241 ORTHO05D003812 4.8e-11 72.4 106 44.3
Carub.0003s1438 Capsella rubella HOM05D003241 ORTHO05D003812 6.3e-11 72.0 125 39.2
VMungo1127G1632 Vigna mungo HOM05D003241 ORTHO05D003812 6.3e-11 72.0 96 50.0
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 2.4e-10 70.1 153 33.3
Cre03.g156100 Chlamydomonas reinhardtii HOM05D003241 ORTHO05D003812 9.1e-10 68.2 116 39.7
Hma1.2p1_0148F.1_g066050 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 2.9e-08 63.2 38 76.3
AagrBONN_evm.TU.Sc2ySwM_344.225 Anthoceros agrestis HOM05D003241 ORTHO05D003812 3.2e-07 59.7 73 49.3
Actinidia16705 Actinidia chinensis HOM05D003241 ORTHO05D003812 5.5e-07 58.9 76 47.4
Lj1A444G10 Lonicera japonica HOM05D003241 ORTHO05D003812 1.2e-06 57.8 145 33.8


User provided reference genes

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