Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 1.6e-177 625.9 315 100.0
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 3.2e-173 611.7 315 98.4
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 7.4e-170 600.5 315 95.2
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 1.9e-157 559.3 315 87.9
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 1.5e-143 513.1 313 82.1
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 7.7e-135 484.2 292 81.8
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.1e-120 437.2 289 77.9
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 2.8e-116 422.5 319 66.1
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 1.8e-112 409.8 319 64.3
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.3e-110 403.7 317 65.3
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 1.7e-110 403.3 316 64.9
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 8.6e-110 401.0 319 64.9
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 3.3e-109 399.1 319 64.9
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 5.6e-109 398.3 314 62.4
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 7.3e-109 397.9 318 65.1
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 6.1e-108 394.8 314 64.0
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 1.4e-107 393.7 318 62.6
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 1.3e-105 387.1 320 63.1
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 6.4e-105 384.8 318 64.5
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 1.6e-103 380.2 315 62.5
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.6e-103 380.2 313 62.0
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 2.0e-103 379.8 302 62.3
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 7.8e-103 377.9 317 62.8
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 7.8e-103 377.9 313 61.7
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 1.3e-102 377.1 320 61.2
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.7e-102 376.7 309 60.8
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 3.0e-102 375.9 308 61.7
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 5.0e-102 375.2 307 62.5
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 1.5e-101 373.6 320 61.2
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 2.1e-100 369.8 318 61.0
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 3.6e-100 369.0 317 61.5
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 4.7e-100 368.6 318 61.6
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 3.1e-99 365.9 272 65.8
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 3.1e-99 365.9 327 58.1
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 3.1e-99 365.9 375 52.8
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 5.2e-99 365.2 317 58.4
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 8.9e-99 364.4 313 62.3
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 1.5e-98 363.6 310 60.0
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 3.4e-98 362.5 321 57.3
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 4.4e-98 362.1 325 58.2
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 1.7e-97 360.1 319 56.7
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.7e-97 360.1 326 58.3
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 3.7e-97 359.0 313 61.7
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 4.9e-97 358.6 329 58.7
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 6.4e-97 358.2 331 56.5
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 1.1e-96 357.5 329 58.4
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.1e-96 357.5 300 63.0
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.2e-95 354.0 309 59.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.0e-95 353.2 320 57.5
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 3.5e-95 352.4 320 58.1
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 4.6e-95 352.1 358 54.2
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 7.8e-95 351.3 237 72.2
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.7e-94 350.1 317 59.6
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 5.0e-94 348.6 318 57.5
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 1.1e-93 347.4 273 63.0
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.1e-93 347.4 313 60.1
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 1.5e-93 347.1 310 56.8
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 7.3e-93 344.7 320 56.6
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 2.8e-92 342.8 315 56.2
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 2.8e-92 342.8 299 59.2
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 8.1e-92 341.3 270 63.3
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 8.1e-92 341.3 315 58.4
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 8.1e-92 341.3 315 58.4
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 1.1e-91 340.9 273 63.0
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.4e-91 340.5 315 55.2
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.8e-91 340.1 274 63.1
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 2.3e-91 339.7 317 57.4
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 2.3e-91 339.7 317 57.4
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 2.3e-91 339.7 319 54.9
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 3.1e-91 339.3 270 63.7
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 4.0e-91 339.0 269 65.1
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 4.0e-91 339.0 269 63.9
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 5.2e-91 338.6 273 62.6
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 6.8e-91 338.2 319 54.5
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 6.8e-91 338.2 315 57.5
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 8.9e-91 337.8 262 63.7
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.5e-90 337.0 331 53.5
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 4.4e-90 335.5 333 52.6
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 9.9e-90 334.3 303 58.1
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 9.9e-90 334.3 315 57.1
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 3.7e-89 332.4 315 56.8
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 3.7e-89 332.4 303 56.1
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 8.3e-89 331.3 311 57.6
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 8.3e-89 331.3 317 56.2
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 1.1e-88 330.9 291 56.4
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 2.4e-88 329.7 262 61.8
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 3.2e-88 329.3 289 55.4
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 1.2e-87 327.4 373 49.3
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.6e-87 327.0 285 56.5
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 2.1e-87 326.6 293 54.6
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 2.7e-87 326.2 289 56.1
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 7.8e-87 324.7 313 55.3
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 7.8e-87 324.7 291 55.3
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.0e-86 324.3 314 55.1
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.3e-86 323.2 291 55.7
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.3e-86 323.2 291 55.7
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 2.3e-86 323.2 294 55.8
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 3.9e-86 322.4 318 53.8
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 3.9e-86 322.4 302 56.6
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 6.6e-86 321.6 340 51.2
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 1.1e-85 320.9 211 73.9
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 3.6e-84 315.8 326 53.1
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 3.1e-83 312.8 214 71.5
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.2e-82 310.8 320 53.4
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 2.9e-81 306.2 238 63.0
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 9.2e-80 301.2 319 52.0
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 1.5e-77 293.9 325 48.9
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.6e-74 281.6 211 67.8
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 4.6e-71 272.3 327 48.9
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 4.6e-63 245.7 219 56.2
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 1.5e-61 240.7 368 39.4
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 3.3e-61 239.6 282 47.5
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 2.6e-58 229.9 314 41.4
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 1.3e-57 227.6 220 55.9
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 6.4e-57 225.3 247 52.2
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 1.1e-56 224.6 312 42.3
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 1.4e-56 224.2 242 52.9
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 5.1e-54 215.7 239 51.9
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 8.2e-52 208.4 242 50.8
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 1.7e-49 200.7 204 54.4
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.1e-48 198.0 232 44.8
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 3.2e-48 196.4 188 55.3
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 6.0e-47 192.2 402 35.8
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 1.0e-46 191.4 253 47.4
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 5.7e-45 185.7 316 40.5
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 6.9e-43 178.7 201 50.7
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 2.9e-41 173.3 194 52.1
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 6.5e-41 172.2 266 35.3
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 1.2e-39 167.9 200 44.0
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 2.8e-36 156.8 205 45.9
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 6.9e-35 152.1 111 69.4
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 2.6e-34 150.2 108 63.9
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 6.5e-33 145.6 163 51.5
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 5.1e-30 136.0 140 48.6
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 5.0e-25 119.4 296 30.7
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 3.9e-22 109.8 109 56.0
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 1.0e-17 95.1 196 29.6
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 3.0e-14 83.6 200 29.5
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.9e-08 64.3 80 38.8
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 5.5e-08 62.8 45 64.4


User provided reference genes

Program Settings