Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g012630 Solanum pennellii HOM05D004190 ORTHO05D004692 5.1e-57 224.2 111 100.0
Sopen01g043570 Solanum pennellii HOM05D004190 ORTHO05D004692 5.1e-57 224.2 111 100.0
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 4.9e-20 101.3 69 72.5
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.3e-17 93.2 90 50.0
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 8.7e-17 90.5 100 46.0
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 1.5e-16 89.7 84 53.6
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 1.9e-16 89.4 100 45.0
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 1.4e-14 83.2 84 53.6
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 3.1e-14 82.0 84 48.8
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 4.1e-14 81.6 79 50.6
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.2e-13 80.1 83 48.2
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.5e-13 79.7 87 48.3
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 2.6e-13 79.0 99 44.4
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 4.5e-13 78.2 79 45.6
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 2.9e-12 75.5 72 52.8
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 1.4e-11 73.2 78 50.0
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 1.9e-11 72.8 88 46.6
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 1.9e-11 72.8 80 48.8
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 3.2e-11 72.0 82 43.9
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 3.2e-11 72.0 64 50.0
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 3.2e-11 72.0 111 36.9
PGSC0003DMG400042312 Solanum tuberosum HOM05D004190 ORTHO05D018124 4.2e-11 71.6 80 43.8
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 7.2e-11 70.9 122 36.1
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 7.2e-11 70.9 66 50.0
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 1.2e-10 70.1 65 43.1
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 1.2e-10 70.1 92 41.3
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 2.1e-10 69.3 58 53.4
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.7e-10 68.9 78 41.0
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 2.7e-10 68.9 63 49.2
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 2.7e-10 68.9 63 49.2
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.7e-10 68.9 80 42.5
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 4.6e-10 68.2 77 45.5
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 6.1e-10 67.8 86 37.2
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 6.1e-10 67.8 85 45.9
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 7.9e-10 67.4 77 44.2
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 7.9e-10 67.4 56 51.8
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 1.0e-09 67.0 93 37.6
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.0e-09 67.0 79 41.8
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 1.4e-09 66.6 62 46.8
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.4e-09 66.6 62 46.8
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 1.8e-09 66.2 80 38.8
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 1.8e-09 66.2 86 36.0
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 1.8e-09 66.2 86 36.0
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 1.8e-09 66.2 86 36.0
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 1.8e-09 66.2 85 41.2
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 2.3e-09 65.9 83 42.2
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 2.3e-09 65.9 62 43.5
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 2.3e-09 65.9 62 43.5
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.3e-09 65.9 73 45.2
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 2.3e-09 65.9 75 45.3
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 2.3e-09 65.9 56 55.4
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 3.0e-09 65.5 71 43.7
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 3.9e-09 65.1 62 45.2
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 3.9e-09 65.1 73 45.2
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 3.9e-09 65.1 53 49.1
Solyc10g049990.1 Solanum lycopersicum HOM05D004190 ORTHO05D018124 3.9e-09 65.1 58 50.0
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 5.1e-09 64.7 67 40.3
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.1e-09 64.7 76 42.1
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.1e-09 64.7 105 37.1
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 5.1e-09 64.7 105 37.1
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 5.1e-09 64.7 81 42.0
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 6.7e-09 64.3 76 42.1
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 6.7e-09 64.3 76 42.1
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 6.7e-09 64.3 76 42.1
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 6.7e-09 64.3 106 38.7
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 8.8e-09 63.9 61 42.6
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 8.8e-09 63.9 53 47.2
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 8.8e-09 63.9 79 41.8
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 8.8e-09 63.9 86 41.9
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 1.1e-08 63.5 76 43.4
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.1e-08 63.5 94 37.2
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.1e-08 63.5 63 49.2
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.1e-08 63.5 74 45.9
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 1.1e-08 63.5 107 34.6
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 1.5e-08 63.2 72 43.1
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 1.5e-08 63.2 53 50.9
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.5e-08 63.2 53 50.9
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 1.5e-08 63.2 53 50.9
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 1.5e-08 63.2 74 43.2
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 1.5e-08 63.2 85 41.2
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.5e-08 63.2 76 42.1
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 1.9e-08 62.8 53 50.9
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 1.9e-08 62.8 53 47.2
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.9e-08 62.8 64 46.9
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.9e-08 62.8 64 46.9
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.9e-08 62.8 64 46.9
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 1.9e-08 62.8 51 51.0
Sopen10g021100 Solanum pennellii HOM05D004190 ORTHO05D018124 1.9e-08 62.8 80 40.0
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 2.5e-08 62.4 70 40.0
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 3.3e-08 62.0 68 41.2
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 4.3e-08 61.6 93 35.5
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 4.3e-08 61.6 89 36.0
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 5.7e-08 61.2 82 40.2
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 5.7e-08 61.2 63 46.0
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 7.4e-08 60.8 85 35.3
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 7.4e-08 60.8 74 45.9
TWI09G1536 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 9.7e-08 60.5 56 48.2
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.3e-07 60.1 54 42.6
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 1.3e-07 60.1 54 42.6
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 1.3e-07 60.1 54 42.6
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 1.3e-07 60.1 83 36.1
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 2.2e-07 59.3 79 40.5
CAN.G745.24 Capsicum annuum HOM05D004190 ORTHO05D004692 2.8e-07 58.9 50 54.0
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 3.7e-07 58.5 54 50.0
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 4.8e-07 58.2 110 29.1
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 6.3e-07 57.8 50 48.0
SEGI_27640 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 6.3e-07 57.8 56 46.4
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 8.2e-07 57.4 67 41.8
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 8.2e-07 57.4 58 46.6
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.1e-06 57.0 56 42.9
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.1e-06 57.0 84 38.1
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.1e-06 57.0 53 50.9
SEGI_27595 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 1.1e-06 57.0 50 46.0
PGSC0003DMG400024416 Solanum tuberosum HOM05D004190 ORTHO05D018124 1.1e-06 57.0 86 34.9
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.4e-06 56.6 102 37.3
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 1.8e-06 56.2 50 46.0
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 2.4e-06 55.8 74 33.8
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 4.1e-06 55.1 56 44.6
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 5.3e-06 54.7 59 35.6
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 5.3e-06 54.7 87 37.9
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 5.3e-06 54.7 52 44.2
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 9.1e-06 53.9 75 36.0
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 9.1e-06 53.9 56 46.4
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 9.1e-06 53.9 56 46.4
Manes.01G173566 Manihot esculenta HOM05D065945 ORTHO05D004692 9.1e-06 53.9 47 51.1


User provided reference genes

Program Settings