Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g096650.2 Solanum lycopersicum HOM05D004285 ORTHO05D005176 5.8e-100 367.9 228 100.0
Sopen12g032480 Solanum pennellii HOM05D004285 ORTHO05D005176 1.9e-98 362.8 228 93.4
CAN.G566.38 Capsicum annuum HOM05D004285 ORTHO05D005176 3.3e-95 352.1 228 90.4
Nitab4.5_0000668g0170 Nicotiana tabacum HOM05D004285 ORTHO05D005176 3.4e-92 342.0 228 86.4
Peaxi162Scf00169g00092 Petunia axillaris HOM05D004285 ORTHO05D005176 8.4e-91 337.4 228 86.4
Nitab4.5_0009744g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 1.4e-90 336.7 228 86.8
Dinv12984 Davidia involucrata HOM05D004285 ORTHO05D005176 7.1e-82 307.8 228 78.5
GSVIVG01029745001 Vitis vinifera HOM05D004285 ORTHO05D005176 1.2e-81 307.0 228 74.1
TAR628G0040 Trochodendron aralioides HOM05D004285 ORTHO05D005176 3.0e-80 302.4 229 71.6
TAR376G0205 Trochodendron aralioides HOM05D004285 ORTHO05D005176 1.5e-79 300.1 229 71.6
CSS0033426 Camellia sinensis var. sinensis HOM05D004285 ORTHO05D005176 2.5e-79 299.3 228 72.8
TWI79G0936 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 9.7e-79 297.4 228 71.1
Nitab4.5_0008205g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 2.8e-78 295.8 228 76.3
Cc03_g16000 Coffea canephora HOM05D004285 ORTHO05D005176 3.7e-78 295.4 228 75.0
DCAR_001476 Daucus carota HOM05D004285 ORTHO05D005176 6.3e-78 294.7 228 78.1
QL10p041258 Quercus lobata HOM05D004285 ORTHO05D005176 4.1e-77 292.0 230 71.7
QL10p041526 Quercus lobata HOM05D004285 ORTHO05D005176 4.1e-77 292.0 230 71.7
MSTRG.22052 Avicennia marina HOM05D004285 ORTHO05D005176 5.3e-77 291.6 228 71.9
SGA_v2.0_scaffold12G06217 Striga asiatica HOM05D004285 ORTHO05D005176 6.9e-77 291.2 228 71.5
CiPaw.03G117900 Carya illinoinensis HOM05D004285 ORTHO05D005176 9.0e-77 290.8 228 74.1
ECA234G4310 Erigeron canadensis HOM05D004285 ORTHO05D005176 1.2e-76 290.4 228 72.4
CiPaw.04G079800 Carya illinoinensis HOM05D004285 ORTHO05D005176 1.5e-76 290.0 228 80.7
EL10Ac8g20044 Beta vulgaris HOM05D004285 ORTHO05D005176 2.0e-76 289.7 228 70.2
Thecc.01G137100 Theobroma cacao HOM05D004285 ORTHO05D005176 3.4e-76 288.9 228 70.6
Potri.005G067700 Populus trichocarpa HOM05D004285 ORTHO05D005176 5.0e-75 285.0 228 70.6
Cfa002202 Carpinus fangiana HOM05D004285 ORTHO05D005176 8.5e-75 284.3 228 70.2
unitig_736.g22477 Utricularia gibba HOM05D004285 ORTHO05D005176 8.5e-75 284.3 228 69.3
PGR102G2430 Punica granatum HOM05D004285 ORTHO05D005176 1.1e-74 283.9 228 70.6
HanXRQChr09g0241311 Helianthus annuus HOM05D004285 ORTHO05D005176 1.9e-74 283.1 228 70.6
TWI75G0304 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 1.9e-74 283.1 228 68.9
Peaxi162Scf01205g00036 Petunia axillaris HOM05D004285 ORTHO05D005176 3.2e-74 282.3 228 72.4
arahy.Tifrunner.gnm1.ann1.054DCV Arachis hypogaea HOM05D004285 ORTHO05D005176 4.2e-74 282.0 228 72.4
Prupe.4G274300 Prunus persica HOM05D004285 ORTHO05D005176 9.4e-74 280.8 228 71.1
CAN.G607.7 Capsicum annuum HOM05D004285 ORTHO05D005176 1.2e-73 280.4 254 68.5
FvH4_4g10490 Fragaria vesca HOM05D004285 ORTHO05D005176 1.2e-73 280.4 228 68.0
Gohir.D04G032400 Gossypium hirsutum HOM05D004285 ORTHO05D005176 1.2e-73 280.4 228 68.4
Oeu050306.1 Olea europaea HOM05D004285 ORTHO05D005176 1.2e-73 280.4 228 73.2
Glyma.06G155800 Glycine max HOM05D004285 ORTHO05D005176 1.6e-73 280.0 228 68.9
Gohir.A05G382800 Gossypium hirsutum HOM05D004285 ORTHO05D005176 2.1e-73 279.6 228 68.9
THA.LOC104819347 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 2.1e-73 279.6 228 75.0
Atru.chr4.994 Acer truncatum HOM05D004285 ORTHO05D005176 4.6e-73 278.5 228 72.8
Glyma.04G210200 Glycine max HOM05D004285 ORTHO05D005176 4.6e-73 278.5 228 68.9
Phvul.009G154500 Phaseolus vulgaris HOM05D004285 ORTHO05D005176 4.6e-73 278.5 228 68.4
Sabra05G0055600 Salix brachista HOM05D004285 ORTHO05D005176 4.6e-73 278.5 226 69.5
Lj4g0011662 Lotus japonicus HOM05D004285 ORTHO05D005176 6.1e-73 278.1 228 68.0
CsaV3_4G030940 Cucumis sativus L. HOM05D004285 ORTHO05D005176 7.9e-73 277.7 228 66.7
Psat5g059640 Pisum sativum HOM05D004285 ORTHO05D005176 7.9e-73 277.7 228 67.5
RcHm_v2.0_Chr4g0406031 Rosa chinensis HOM05D004285 ORTHO05D005176 1.0e-72 277.3 228 67.1
MD15G1135100 Malus domestica HOM05D004285 ORTHO05D005176 1.4e-72 276.9 228 68.9
Sed0015518 Sechium edule HOM05D004285 ORTHO05D005176 1.4e-72 276.9 228 69.7
Hund21406 Selenicereus undatus HOM05D004285 ORTHO05D005176 1.4e-72 276.9 228 69.7
Lj1g0004585 Lotus japonicus HOM05D004285 ORTHO05D005176 1.8e-72 276.6 228 67.5
MBI04_g38139_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 2.3e-72 276.2 213 72.3
Manes.06G003800 Manihot esculenta HOM05D004285 ORTHO05D005176 2.3e-72 276.2 228 68.4
Actinidia20030 Actinidia chinensis HOM05D004285 ORTHO05D005176 3.0e-72 275.8 228 69.7
Lalb_Chr08g0238191 Lupinus albus HOM05D004285 ORTHO05D005176 3.0e-72 275.8 228 69.7
Lalb_Chr11g0068611 Lupinus albus HOM05D004285 ORTHO05D005176 3.0e-72 275.8 228 70.2
AUR62012692 Chenopodium quinoa HOM05D004285 ORTHO05D005176 3.9e-72 275.4 228 66.7
AUR62021963 Chenopodium quinoa HOM05D004285 ORTHO05D005176 3.9e-72 275.4 228 66.7
MELO3C008970.2 Cucumis melo HOM05D004285 ORTHO05D005176 3.9e-72 275.4 228 66.7
Gorai.012G036800 Gossypium raimondii HOM05D004285 ORTHO05D005176 3.9e-72 275.4 228 68.9
Ciclev10002389m.g Citrus clementina HOM05D004285 ORTHO05D005176 6.7e-72 274.6 228 68.0
FAN22G0010 Fragaria x ananassa HOM05D004285 ORTHO05D005176 8.8e-72 274.2 228 67.5
arahy.Tifrunner.gnm1.ann1.GQS5IM Arachis hypogaea HOM05D004285 ORTHO05D005176 1.1e-71 273.9 204 76.0
Duzib264G0533 Durio zibethinus HOM05D004285 ORTHO05D005176 1.1e-71 273.9 228 67.1
PSO675G1889 Papaver somniferum HOM05D004285 ORTHO05D005176 1.1e-71 273.9 233 68.7
Ca_16982_v3 Cicer arietinum L. HOM05D004285 ORTHO05D005176 1.5e-71 273.5 229 66.8
Duzib187G0355 Durio zibethinus HOM05D004285 ORTHO05D005176 2.0e-71 273.1 228 67.1
PSO170G3147 Papaver somniferum HOM05D004285 ORTHO05D005176 3.3e-71 272.3 233 68.2
VMungo1309G0657 Vigna mungo HOM05D004285 ORTHO05D005176 4.3e-71 271.9 204 73.0
ATR0706G129 Amborella trichopoda HOM05D004285 ORTHO05D005176 7.4e-71 271.2 228 66.7
AL6G19650 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 7.4e-71 271.2 228 68.9
Nn5g28435 Nelumbo nucifera HOM05D004285 ORTHO05D005176 7.4e-71 271.2 244 66.0
THA.LOC104818421 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 7.4e-71 271.2 229 73.8
FAN10G2762 Fragaria x ananassa HOM05D004285 ORTHO05D005176 9.7e-71 270.8 229 74.7
Carub.0006s0781 Capsella rubella HOM05D004285 ORTHO05D005176 2.2e-70 269.6 228 72.8
Cpa.g.sc37.8 Carica papaya HOM05D004285 ORTHO05D005176 2.2e-70 269.6 219 68.5
Haze_25379 Corylus avellana HOM05D004285 ORTHO05D005176 2.2e-70 269.6 264 61.7
TPR.G33552 Trifolium pratense HOM05D004285 ORTHO05D005176 2.2e-70 269.6 228 67.5
Aqoxy6G00309 Aquilegia oxysepala HOM05D004285 ORTHO05D005176 2.8e-70 269.2 228 71.9
Sc03g0010160 Simmondsia chinensis HOM05D004285 ORTHO05D005176 3.7e-70 268.9 228 67.5
Medtr3g096680 Medicago truncatula HOM05D004285 ORTHO05D005176 4.8e-70 268.5 251 62.5
FAN06G1556 Fragaria x ananassa HOM05D004285 ORTHO05D005176 6.3e-70 268.1 228 75.0
Nitab4.5_0000013g0100 Nicotiana tabacum HOM05D004285 ORTHO05D005176 6.3e-70 268.1 198 77.3
FvH4_7g03820 Fragaria vesca HOM05D004285 ORTHO05D005176 1.8e-69 266.5 228 74.6
AT5G09260 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 3.1e-69 265.8 228 71.5
Aa31LG3G17740 Aethionema arabicum HOM05D004285 ORTHO05D005176 6.9e-69 264.6 230 70.0
BcaC01g02639 Brassica carinata HOM05D004285 ORTHO05D005176 9.1e-69 264.2 229 67.2
Sabra07G0083700 Salix brachista HOM05D004285 ORTHO05D005176 9.1e-69 264.2 181 78.5
Lsat_1_v5_gn_4_38601 Lactuca sativa HOM05D004285 ORTHO05D005176 1.2e-68 263.8 228 72.4
AL8G41110 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 2.0e-68 263.1 228 69.7
Thhalv10014638m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 2.0e-68 263.1 228 73.2
AT5G63880 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 3.4e-68 262.3 228 66.7
Potri.007G101500 Populus trichocarpa HOM05D004285 ORTHO05D005176 3.4e-68 262.3 228 67.1
Sp2g26940 Schrenkiella parvula HOM05D004285 ORTHO05D005176 5.9e-68 261.5 228 65.4
Sp6g34050 Schrenkiella parvula HOM05D004285 ORTHO05D005176 5.9e-68 261.5 228 72.4
CARHR277780 Cardamine hirsuta HOM05D004285 ORTHO05D005176 7.7e-68 261.2 228 65.4
Carub.0008s2465 Capsella rubella HOM05D004285 ORTHO05D005176 1.0e-67 260.8 228 66.2
BcaB08g37222 Brassica carinata HOM05D004285 ORTHO05D005176 1.7e-67 260.0 228 72.4
VMungo1309G3080 Vigna mungo HOM05D004285 ORTHO05D005176 2.2e-67 259.6 216 67.6
BcaB02g09769 Brassica carinata HOM05D004285 ORTHO05D005176 3.8e-67 258.8 229 64.6
BolC3t18513H Brassica oleracea HOM05D004285 ORTHO05D005176 3.8e-67 258.8 229 66.4
CANSAT80G1716 Cannabis sativa HOM05D004285 ORTHO05D005176 1.1e-66 257.3 228 66.2
Aa31LG1G18000 Aethionema arabicum HOM05D004285 ORTHO05D005176 1.9e-66 256.5 228 65.4
BcaNung04632 Brassica carinata HOM05D004285 ORTHO05D005176 2.5e-66 256.1 228 64.0
BcaNung04637 Brassica carinata HOM05D004285 ORTHO05D005176 2.5e-66 256.1 228 64.0
PSO407G0164 Papaver somniferum HOM05D004285 ORTHO05D005176 3.2e-66 255.8 226 65.9
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 5.5e-66 255.0 175 82.9
TPR.G24222 Trifolium pratense HOM05D004285 ORTHO05D005176 5.5e-66 255.0 220 68.2
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 7.2e-66 254.6 207 73.4
Rhsim08G0027500 Rhododendron simsii HOM05D004285 ORTHO05D005176 1.6e-65 253.4 214 76.6
vmacro18460 Vaccinium macrocarpon HOM05D004285 ORTHO05D005176 2.1e-65 253.1 228 69.3
HPP92_022156 Vanilla planifolia HOM05D004285 ORTHO05D005176 6.1e-65 251.5 244 61.1
C03p62560 Brassica napus HOM05D004285 ORTHO05D005176 1.0e-64 250.8 178 74.7
Thhalv10004899m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 3.0e-64 249.2 228 64.5
A06p30500 Brassica napus HOM05D004285 ORTHO05D005176 8.8e-64 247.7 211 66.4
Eucgr.H05139 Eucalyptus grandis HOM05D004285 ORTHO05D005176 1.1e-63 247.3 228 62.3
Zm00001eb183830 Zea mays HOM05D004285 ORTHO05D005176 2.6e-63 246.1 224 66.5
BraA10t44845Z Brassica rapa HOM05D004285 ORTHO05D005176 3.3e-63 245.7 248 63.7
BraA06t25999Z Brassica rapa HOM05D004285 ORTHO05D005176 5.7e-63 245.0 250 59.6
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 6.3e-62 241.5 227 67.0
Zm00001eb246180 Zea mays HOM05D004285 ORTHO05D005176 8.2e-62 241.1 224 65.2
CDE02G0727 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 9.1e-61 237.7 176 74.4
Os02g0596500 Oryza sativa ssp. japonica HOM05D004285 ORTHO05D005176 9.1e-61 237.7 241 62.7
CDE08G1470 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 1.5e-60 236.9 233 61.8
SMO232G0091 Selaginella moellendorffii HOM05D004285 ORTHO05D005176 1.2e-57 227.3 223 57.0
FAN12G0473 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.7e-57 226.1 356 43.5
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 6.1e-57 224.9 151 80.8
Oeu022909.3 Olea europaea HOM05D004285 ORTHO05D005176 1.0e-56 224.2 195 70.3
AagrBONN_evm.TU.Sc2ySwM_228.3779 Anthoceros agrestis HOM05D004285 ORTHO05D005176 1.3e-54 217.2 175 65.7
ClCG04G001580 Citrullus lanatus HOM05D004285 ORTHO05D005176 6.3e-54 214.9 198 61.1
CARHR204160 Cardamine hirsuta HOM05D004285 ORTHO05D005176 9.1e-53 211.1 194 64.4
Mapoly0073s0065 Marchantia polymorpha HOM05D004285 ORTHO05D005176 1.6e-52 210.3 181 60.2
FAN03G0757 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.5e-50 203.8 231 61.5
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 3.6e-49 199.1 182 62.1
AagrBONN_evm.TU.Sc2ySwM_117.2591 Anthoceros agrestis HOM05D004285 ORTHO05D005176 1.4e-48 197.2 175 60.0
Pp3c2_32100 Physcomitrium patens HOM05D004285 ORTHO05D005176 5.7e-47 191.8 175 64.6
Lj2A489T51 Lonicera japonica HOM05D004285 ORTHO05D005176 1.4e-45 187.2 134 76.1
C09p68060 Brassica napus HOM05D004285 ORTHO05D005176 5.4e-45 185.3 132 83.3
C09p68120 Brassica napus HOM05D004285 ORTHO05D005176 5.4e-45 185.3 132 83.3
CBR_g70720 Chara braunii HOM05D004285 ORTHO05D005176 1.4e-40 170.6 180 51.7
FAN12G2135 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.0e-39 166.8 325 37.8
MBI18_g28836_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 4.2e-34 149.1 103 79.6
Actinidia06578 Actinidia chinensis HOM05D004285 ORTHO05D005176 1.1e-29 134.4 113 66.4
FAN07G1696 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.1e-29 134.4 228 42.1
MBI04_g07580_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 1.6e-28 130.6 103 74.8
Cre13.g589700 Chlamydomonas reinhardtii HOM05D004285 ORTHO05D005176 3.9e-27 125.9 170 42.4
Aa31LG4G3130 Aethionema arabicum HOM05D004285 ORTHO05D005176 6.1e-25 118.6 165 47.9
Migut.G00927 Erythranthe guttata HOM05D004285 ORTHO05D005176 6.1e-25 118.6 85 75.3
AL697U10010 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 8.9e-24 114.8 85 71.8
AL1G38920 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 1.4e-16 90.9 86 60.5
AagrBONN_evm.TU.Sc2ySwM_344.1024 Anthoceros agrestis HOM05D004285 ORTHO05D005176 3.1e-16 89.7 87 57.5
PRCOL_00005830 Prasinoderma coloniale HOM05D004285 ORTHO05D005176 2.0e-15 87.0 169 33.7
BolC9t59508H Brassica oleracea HOM05D004285 ORTHO05D005176 2.6e-15 86.7 99 52.5
C09p67470 Brassica napus HOM05D004285 ORTHO05D005176 4.4e-15 85.9 99 52.5
MCO14G274 Micromonas commoda HOM05D004285 ORTHO05D005176 7.5e-15 85.1 149 35.6
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 1.7e-14 84.0 83 56.6
Cfa026504 Carpinus fangiana HOM05D004285 ORTHO05D005176 8.3e-14 81.6 221 33.0
Haze_26675 Corylus avellana HOM05D004285 ORTHO05D005176 1.4e-13 80.9 189 30.2
AagrBONN_evm.TU.Sc2ySwM_344.1025 Anthoceros agrestis HOM05D004285 ORTHO05D005176 3.0e-11 73.2 50 70.0
C09p09560 Brassica napus HOM05D004285 ORTHO05D005176 2.5e-10 70.1 141 39.0
CARHR204170 Cardamine hirsuta HOM05D004285 ORTHO05D005176 2.3e-08 63.5 35 88.6


User provided reference genes

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