Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g020770.3 Solanum lycopersicum HOM05D004901 ORTHO05D005592 0.0e+00 1209.5 623 100.0
Sopen11g010870 Solanum pennellii HOM05D004901 ORTHO05D005592 0.0e+00 1137.5 609 97.4
CAN.G259.2 Capsicum annuum HOM05D004901 ORTHO05D005592 3.0e-255 885.2 611 77.9
Nitab4.5_0003010g0040 Nicotiana tabacum HOM05D004901 ORTHO05D005592 1.9e-230 802.7 648 68.5
Nitab4.5_0000167g0270 Nicotiana tabacum HOM05D004901 ORTHO05D005592 7.1e-217 757.7 674 63.5
Peaxi162Scf00391g00532 Petunia axillaris HOM05D004901 ORTHO05D005592 4.3e-214 748.4 609 69.3
Oeu021225.1 Olea europaea HOM05D004901 ORTHO05D005592 1.4e-82 311.6 604 38.9
Lj7C288T6 Lonicera japonica HOM05D004901 ORTHO05D005592 3.8e-77 293.5 634 38.8
Dinv02586 Davidia involucrata HOM05D004901 ORTHO05D005592 5.7e-73 279.6 524 40.5
Atru.chr13.2408 Acer truncatum HOM05D004901 ORTHO05D005592 6.5e-69 266.2 633 35.4
Prupe.1G551100 Prunus persica HOM05D004901 ORTHO05D005592 3.3e-65 253.8 616 36.9
vmacro00755 Vaccinium macrocarpon HOM05D004901 ORTHO05D005592 1.4e-63 248.4 505 38.0
Ciclev10000033m.g Citrus clementina HOM05D004901 ORTHO05D005592 4.1e-63 246.9 610 35.4
Cfa008133 Carpinus fangiana HOM05D004901 ORTHO05D005592 7.0e-63 246.1 610 35.9
MD15G1404400 Malus domestica HOM05D004901 ORTHO05D005592 2.7e-62 244.2 602 36.2
GSVIVG01034779001 Vitis vinifera HOM05D004901 ORTHO05D005592 2.7e-62 244.2 604 35.1
CiPaw.03G019300 Carya illinoinensis HOM05D004901 ORTHO05D005592 1.7e-61 241.5 627 35.6
Rhsim11G0056100 Rhododendron simsii HOM05D004901 ORTHO05D005592 8.5e-61 239.2 543 36.1
Manes.18G103400 Manihot esculenta HOM05D004901 ORTHO05D005592 1.0e-58 232.3 619 35.9
QL09p004928 Quercus lobata HOM05D004901 ORTHO05D005592 1.8e-58 231.5 630 34.0
FvH4_7g03750 Fragaria vesca HOM05D004901 ORTHO05D005592 1.3e-56 225.3 654 33.2
FAN06G0910 Fragaria x ananassa HOM05D004901 ORTHO05D005592 1.7e-56 224.9 655 33.0
Potri.013G109600 Populus trichocarpa HOM05D004901 ORTHO05D005592 8.3e-56 222.6 598 34.4
MSTRG.1544 Avicennia marina HOM05D004901 ORTHO05D005592 3.1e-55 220.7 598 35.1
FAN03G3444 Fragaria x ananassa HOM05D004901 ORTHO05D005592 5.4e-55 219.9 602 34.6
Gohir.D13G124700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 2.0e-54 218.0 606 31.8
Gohir.A13G120700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 2.7e-54 217.6 605 32.4
Gorai.013G139300 Gossypium raimondii HOM05D004901 ORTHO05D005592 2.7e-54 217.6 607 31.8
RcHm_v2.0_Chr7g0228871 Rosa chinensis HOM05D004901 ORTHO05D005592 5.9e-54 216.5 607 33.8
Duzib177G0087 Durio zibethinus HOM05D004901 ORTHO05D005592 2.8e-51 207.6 630 32.2
TAR628G1246 Trochodendron aralioides HOM05D004901 ORTHO05D005592 2.2e-48 198.0 670 30.0
Cc00_g06540 Coffea canephora HOM05D004901 ORTHO05D005592 3.7e-48 197.2 569 32.9
Migut.C01287 Erythranthe guttata HOM05D004901 ORTHO05D005592 1.8e-47 194.9 612 32.7
DCAR_011526 Daucus carota HOM05D004901 ORTHO05D005592 3.5e-46 190.7 611 31.4
MBI17_g21472_MAGBIO Magnolia biondii HOM05D004901 ORTHO05D005592 7.8e-46 189.5 662 30.4
AT1G35530 Arabidopsis thaliana HOM05D004901 ORTHO05D005592 1.5e-44 185.3 605 31.4
SGA_v2.0_scaffold24G10583 Striga asiatica HOM05D004901 ORTHO05D005592 1.5e-44 185.3 622 31.7
Sc23g0001370 Simmondsia chinensis HOM05D004901 ORTHO05D005592 9.5e-44 182.6 588 31.6
SalBow7G4726 Salvia bowleyana HOM05D004901 ORTHO05D005592 1.6e-43 181.8 603 31.2
Lsat_1_v5_gn_8_141780 Lactuca sativa HOM05D004901 ORTHO05D005592 3.6e-43 180.6 579 33.9
Lj3g0009157 Lotus japonicus HOM05D004901 ORTHO05D005592 4.0e-42 177.2 476 34.9
CANSAT56G0037 Cannabis sativa HOM05D004901 ORTHO05D005592 1.2e-41 175.6 614 29.3
THA.LOC104816395 Tarenaya hassleriana HOM05D004901 ORTHO05D005592 1.2e-41 175.6 610 30.2
ECA233G3640 Erigeron canadensis HOM05D004901 ORTHO05D000001 1.4e-39 168.7 589 31.2
Eucgr.F02585 Eucalyptus grandis HOM05D004901 ORTHO05D005592 4.1e-39 167.2 642 29.4
A05p23720 Brassica napus HOM05D004901 ORTHO05D005592 2.7e-38 164.5 456 34.0
Nn5g27609 Nelumbo nucifera HOM05D004901 ORTHO05D005592 2.7e-38 164.5 751 27.8
Phvul.011G000500 Phaseolus vulgaris HOM05D004901 ORTHO05D005592 1.7e-37 161.8 477 33.1
Glyma.08G238200 Glycine max HOM05D004901 ORTHO05D005592 3.0e-37 161.0 477 32.7
BcaC05g27729 Brassica carinata HOM05D004901 ORTHO05D005592 4.3e-36 157.1 461 32.1
C05p37130 Brassica napus HOM05D004901 ORTHO05D005592 4.3e-36 157.1 461 32.1
TPR.G26106 Trifolium pratense HOM05D004901 ORTHO05D005592 4.3e-36 157.1 496 32.3
VMungo1127G1203 Vigna mungo HOM05D004901 ORTHO05D005592 9.5e-36 156.0 468 31.6
MELO3C008073.2 Cucumis melo HOM05D004901 ORTHO05D005592 1.2e-35 155.6 473 32.3
Hund16786 Selenicereus undatus HOM05D004901 ORTHO05D005592 1.2e-35 155.6 450 32.4
Carub.0001s3315 Capsella rubella HOM05D004901 ORTHO05D005592 1.6e-35 155.2 609 29.1
Thhalv10002370m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 8.0e-35 152.9 614 29.5
PGR042G2824 Punica granatum HOM05D004901 ORTHO05D005592 3.1e-34 151.0 607 30.8
HanXRQChr17g0559191 Helianthus annuus HOM05D004901 ORTHO05D005592 5.2e-34 150.2 611 31.3
COL.COLO4_12801 Corchorus olitorius HOM05D004901 ORTHO05D005592 6.8e-34 149.8 790 25.6
Sp1g30300 Schrenkiella parvula HOM05D004901 ORTHO05D005592 8.9e-34 149.4 459 32.2
AL1G50380 Arabidopsis lyrata HOM05D004901 ORTHO05D005592 1.2e-33 149.1 606 28.7
Sed0000511 Sechium edule HOM05D004901 ORTHO05D005592 1.2e-33 149.1 446 32.1
BolC5t32466H Brassica oleracea HOM05D004901 ORTHO05D005592 4.4e-33 147.1 641 28.5
Thhalv10001810m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 1.7e-32 145.2 621 28.8
Lalb_Chr01g0000031 Lupinus albus HOM05D004901 ORTHO05D005592 3.7e-32 144.1 447 34.9
Cpa.g.sc66.23 Carica papaya HOM05D004901 ORTHO05D005592 1.4e-31 142.1 442 31.2
BraA05t21240Z Brassica rapa HOM05D004901 ORTHO05D005592 1.9e-31 141.7 624 28.2
BcaB03g13661 Brassica carinata HOM05D004901 ORTHO05D005592 3.2e-31 141.0 468 29.9
Ca_19714_v3 Cicer arietinum L. HOM05D004901 ORTHO05D005592 4.1e-31 140.6 508 32.7
Aqoxy6G00145 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 2.7e-30 137.9 657 28.3
CARHR034280 Cardamine hirsuta HOM05D004901 ORTHO05D005592 1.0e-29 136.0 595 28.1
CDE04G3479 Ceratophyllum demersum HOM05D004901 ORTHO05D005592 1.3e-29 135.6 678 28.2
Aa31LG6G8790 Aethionema arabicum HOM05D004901 ORTHO05D005592 3.9e-29 134.0 561 30.8
ClCG11G008660 Citrullus lanatus HOM05D004901 ORTHO05D005592 3.9e-29 134.0 569 28.3
Psat0s1585g0040 Pisum sativum HOM05D004901 ORTHO05D005592 5.0e-29 133.7 577 28.4
arahy.Tifrunner.gnm1.ann1.CA6GZM Arachis hypogaea HOM05D004901 ORTHO05D005592 6.6e-29 133.3 470 32.1
Thecc.08G186400 Theobroma cacao HOM05D004901 ORTHO05D005592 6.6e-29 133.3 390 32.3
arahy.Tifrunner.gnm1.ann1.0Z9JWZ Arachis hypogaea HOM05D004901 ORTHO05D005592 8.6e-29 132.9 471 32.1
Zm00001eb201140 Zea mays HOM05D004901 ORTHO05D005592 1.5e-28 132.1 617 28.4
PSO782G5557 Papaver somniferum HOM05D004901 ORTHO05D005592 3.3e-28 131.0 697 27.7
PSO170G4536 Papaver somniferum HOM05D004901 ORTHO05D005592 4.3e-28 130.6 704 28.7
Medtr1g103260 Medicago truncatula HOM05D004901 ORTHO05D005592 9.5e-28 129.4 504 30.4
CSS0009856 Camellia sinensis var. sinensis HOM05D004901 ORTHO05D005592 8.1e-27 126.3 424 30.7
ATR0749G100 Amborella trichopoda HOM05D004901 ORTHO05D005592 2.3e-26 124.8 621 28.0
Ah.04g162840 Amaranthus hybridus HOM05D004901 ORTHO05D005592 3.1e-26 124.4 530 28.1
AUR62023519 Chenopodium quinoa HOM05D004901 ORTHO05D005592 6.8e-26 123.2 341 32.8
EL10Ac1g00109 Beta vulgaris HOM05D004901 ORTHO05D005592 4.9e-24 117.1 463 28.5
CsaV3_2G033030 Cucumis sativus L. HOM05D004901 ORTHO05D005592 1.9e-23 115.2 279 33.0
SHI09022 Sapria himalayana HOM05D004901 ORTHO05D005592 2.1e-22 111.7 453 29.6
Haze_13904 Corylus avellana HOM05D004901 ORTHO05D005592 5.6e-20 103.6 365 31.0
HPP92_004438 Vanilla planifolia HOM05D004901 ORTHO05D005592 9.5e-20 102.8 477 28.5
CSS0042276 Camellia sinensis var. sinensis HOM05D004901 ORTHO05D005592 3.8e-16 90.9 186 38.7
Hma1.2p1_0503F.1_g168030 Hydrangea macrophylla HOM05D004901 ORTHO05D005592 3.8e-16 90.9 179 36.9
unitig_747.g21475 Utricularia gibba HOM05D004901 ORTHO05D005592 1.2e-14 85.9 248 33.9
Prupe.2G019600 Prunus persica HOM05D004901 ORTHO05D005592 3.5e-14 84.3 302 29.1
Prupe.2G019700 Prunus persica HOM05D004901 ORTHO05D005592 3.3e-12 77.8 192 35.9
Aqoxy4G02415 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 7.3e-12 76.6 318 29.6
Pp3c20_9530 Physcomitrium patens HOM05D004901 ORTHO05D005592 6.9e-10 70.1 319 30.4
Psat5g126920 Pisum sativum HOM05D004901 ORTHO05D005592 6.4e-08 63.5 147 39.5
AagrBONN_evm.TU.Sc2ySwM_228.534 Anthoceros agrestis HOM05D004901 ORTHO05D005592 9.3e-07 59.7 282 27.3
Mapoly0001s0472 Marchantia polymorpha HOM05D004901 ORTHO05D005592 7.8e-06 56.6 393 28.0


User provided reference genes

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