Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g017340.1 Solanum lycopersicum HOM05D000001 ORTHO05D389848 4.5e-35 150.6 71 100.0
Sopen11g009290 Solanum pennellii HOM05D000001 ORTHO05D009494 7.3e-25 116.7 63 88.9
PGSC0003DMG402009242 Solanum tuberosum HOM05D000001 ORTHO05D009494 6.2e-24 113.6 63 85.7
Solyc11g017370.3 Solanum lycopersicum HOM05D000001 ORTHO05D009494 1.4e-23 112.5 63 85.7
CAN.G526.10 Capsicum annuum HOM05D000001 ORTHO05D009494 2.0e-22 108.6 63 81.0
Nitab4.5_0010892g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009494 8.3e-21 103.2 63 82.5
Nitab4.5_0000560g0060 Nicotiana tabacum HOM05D000001 ORTHO05D009494 3.2e-20 101.3 63 81.0
Peaxi162Scf00310g00083 Petunia axillaris HOM05D000001 ORTHO05D009494 4.1e-20 100.9 63 81.0
unitig_899.g15355 Utricularia gibba HOM05D000001 ORTHO05D009494 3.1e-15 84.7 66 62.1
Oeu027261.2 Olea europaea HOM05D000001 ORTHO05D009494 4.0e-15 84.3 68 61.8
SGA_v2.0_scaffold2G01357 Striga asiatica HOM05D000001 ORTHO05D009494 5.2e-15 84.0 63 66.7
AUR62003543 Chenopodium quinoa HOM05D000001 ORTHO05D009494 8.9e-15 83.2 52 76.9
AUR62017856 Chenopodium quinoa HOM05D000001 ORTHO05D009494 8.9e-15 83.2 52 76.9
EL10Ac6g15338 Beta vulgaris HOM05D000001 ORTHO05D009494 7.5e-14 80.1 52 73.1
HanXRQChr13g0421851 Helianthus annuus HOM05D000100 ORTHO05D009494 1.3e-13 79.3 54 70.4
SalBow6G2474 Salvia bowleyana HOM05D000001 ORTHO05D009494 2.2e-13 78.6 59 66.1
Cc11_g04660 Coffea canephora HOM05D000001 ORTHO05D009494 2.9e-13 78.2 64 65.6
Lj1P1038T31 Lonicera japonica HOM05D000001 ORTHO05D009494 3.7e-13 77.8 55 69.1
MSTRG.8133 Avicennia marina HOM05D000001 ORTHO05D009494 6.4e-13 77.0 63 63.5
Sc08g0002520 Simmondsia chinensis HOM05D000001 ORTHO05D009494 6.4e-13 77.0 61 67.2
Hund12760 Selenicereus undatus HOM05D000001 ORTHO05D009494 8.3e-13 76.6 52 71.2
Lsat_1_v5_gn_3_119881 Lactuca sativa HOM05D000001 ORTHO05D009494 1.1e-12 76.3 54 64.8
vmacro11196 Vaccinium macrocarpon HOM05D000001 ORTHO05D009494 1.1e-12 76.3 53 67.9
Ah.02g121210 Amaranthus hybridus HOM05D000001 ORTHO05D009494 2.4e-12 75.1 53 67.9
CsaV3_4G032500 Cucumis sativus L. HOM05D000001 ORTHO05D009494 5.4e-12 73.9 69 58.0
Actinidia03867 Actinidia chinensis HOM05D000001 ORTHO05D009494 7.1e-12 73.6 53 67.9
Dinv11349 Davidia involucrata HOM05D000100 ORTHO05D009494 9.2e-12 73.2 53 67.9
TWI60G1389 Tripterygium wilfordii HOM05D000001 ORTHO05D009494 9.2e-12 73.2 57 63.2
Sed0019947 Sechium edule HOM05D000001 ORTHO05D009494 1.2e-11 72.8 63 60.3
Eucgr.K01351 Eucalyptus grandis HOM05D000001 ORTHO05D009494 1.6e-11 72.4 57 59.6
Prupe.3G184500 Prunus persica HOM05D000001 ORTHO05D009494 1.6e-11 72.4 53 64.2
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 1.6e-11 72.4 57 64.9
Ciclev10011066m.g Citrus clementina HOM05D000001 ORTHO05D009494 2.1e-11 72.0 62 58.1
MELO3C032516.2 Cucumis melo HOM05D000001 ORTHO05D009494 2.7e-11 71.6 53 67.9
Migut.F01718 Erythranthe guttata HOM05D000001 ORTHO05D009494 2.7e-11 71.6 59 64.4
CSS0005572 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009494 3.5e-11 71.2 56 60.7
CSS0035538 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009494 3.5e-11 71.2 56 60.7
CARHR098020 Cardamine hirsuta HOM05D000001 ORTHO05D009494 3.5e-11 71.2 59 55.9
Haze_13549 Corylus avellana HOM05D000001 ORTHO05D009494 4.6e-11 70.9 56 58.9
BcaC05g28099 Brassica carinata HOM05D000001 ORTHO05D009494 6.0e-11 70.5 63 54.0
C05p41260 Brassica napus HOM05D000001 ORTHO05D009494 6.0e-11 70.5 63 54.0
BolC5t32868H Brassica oleracea HOM05D000001 ORTHO05D009494 6.0e-11 70.5 63 54.0
Solyc11g017320.3 Solanum lycopersicum HOM05D000001 ORTHO05D390449 6.0e-11 70.5 39 87.2
Thecc.01G174200 Theobroma cacao HOM05D000001 ORTHO05D009494 6.0e-11 70.5 65 53.8
AT3G22150 Arabidopsis thaliana HOM05D000001 ORTHO05D009494 7.8e-11 70.1 60 56.7
CiPaw.03G110200 Carya illinoinensis HOM05D000001 ORTHO05D009494 7.8e-11 70.1 53 64.2
CiPaw.03G110700 Carya illinoinensis HOM05D000001 ORTHO05D009494 7.8e-11 70.1 53 64.2
Duzib133G1443 Durio zibethinus HOM05D000001 ORTHO05D009494 7.8e-11 70.1 65 53.8
Gohir.D07G177300 Gossypium hirsutum HOM05D000001 ORTHO05D009494 7.8e-11 70.1 61 57.4
Gorai.001G198300 Gossypium raimondii HOM05D000001 ORTHO05D009494 7.8e-11 70.1 61 57.4
CANSAT25G2259 Cannabis sativa HOM05D000001 ORTHO05D009494 1.0e-10 69.7 49 65.3
Cfa023360 Carpinus fangiana HOM05D000001 ORTHO05D009494 1.0e-10 69.7 56 57.1
Sabra06G0006100 Salix brachista HOM05D000001 ORTHO05D009494 1.0e-10 69.7 53 60.4
Atru.BG.220.p Acer truncatum HOM05D000001 ORTHO05D009494 1.3e-10 69.3 61 60.7
Gohir.A07G164856 Gossypium hirsutum HOM05D000001 ORTHO05D009494 1.3e-10 69.3 61 57.4
MD09G1141900 Malus domestica HOM05D000001 ORTHO05D009494 1.3e-10 69.3 49 65.3
Nn1g09315 Nelumbo nucifera HOM05D000001 ORTHO05D009494 1.3e-10 69.3 62 58.1
Aa31LG8G8710 Aethionema arabicum HOM05D000001 ORTHO05D009494 1.7e-10 68.9 52 61.5
Aqoxy1G02917 Aquilegia oxysepala HOM05D000001 ORTHO05D009494 1.7e-10 68.9 56 58.9
PGR102G2228 Punica granatum HOM05D000001 ORTHO05D009494 1.7e-10 68.9 53 62.3
RcHm_v2.0_Chr2g0153281 Rosa chinensis HOM05D000001 ORTHO05D009494 1.7e-10 68.9 56 58.9
Cpa.g.sc8.267 Carica papaya HOM05D000001 ORTHO05D009494 2.3e-10 68.6 52 65.4
Hma1.2p1_1222F.1_g268290 Hydrangea macrophylla HOM05D000001 ORTHO05D009494 2.3e-10 68.6 53 60.4
Potri.006G007800 Populus trichocarpa HOM05D000001 ORTHO05D009494 2.3e-10 68.6 53 58.5
AL3G36340 Arabidopsis lyrata HOM05D000001 ORTHO05D009494 3.0e-10 68.2 61 54.1
Carub.0003s2232 Capsella rubella HOM05D000001 ORTHO05D009494 3.0e-10 68.2 57 54.4
TAR381G0203 Trochodendron aralioides HOM05D000001 ORTHO05D009494 3.9e-10 67.8 53 60.4
BcaB06g26313 Brassica carinata HOM05D000001 ORTHO05D009494 5.1e-10 67.4 52 59.6
MD09G1141400 Malus domestica HOM05D000001 ORTHO05D009494 5.1e-10 67.4 55 60.0
Manes.09G070519 Manihot esculenta HOM05D000001 ORTHO05D009494 5.1e-10 67.4 57 57.9
PSO063G6162 Papaver somniferum HOM05D000001 ORTHO05D009494 5.1e-10 67.4 53 60.4
PSO782G2739 Papaver somniferum HOM05D000001 ORTHO05D009494 5.1e-10 67.4 53 60.4
BraA05t21544Z Brassica rapa HOM05D000001 ORTHO05D009494 6.6e-10 67.0 52 59.6
THA.LOC104808509 Tarenaya hassleriana HOM05D000001 ORTHO05D009494 8.6e-10 66.6 64 50.0
Thhalv10020073m.g Eutrema salsugineum HOM05D000001 ORTHO05D009494 1.1e-09 66.2 52 57.7
Sp3g19960 Schrenkiella parvula HOM05D000001 ORTHO05D009494 1.1e-09 66.2 52 57.7
QL04p063285 Quercus lobata HOM05D000001 ORTHO05D009494 1.5e-09 65.9 53 60.4
COL.COLO4_19982 Corchorus olitorius HOM05D000001 ORTHO05D009494 2.5e-09 65.1 57 57.9
Lalb_Chr04g0247031 Lupinus albus HOM05D000001 ORTHO05D009494 2.5e-09 65.1 56 62.5
Phvul.008G290100 Phaseolus vulgaris HOM05D000001 ORTHO05D009494 9.5e-09 63.2 53 60.4
Medtr5g098860 Medicago truncatula HOM05D000001 ORTHO05D009494 2.1e-08 62.0 53 62.3
FAN13G2276 Fragaria x ananassa HOM05D000001 ORTHO05D009494 3.6e-08 61.2 49 59.2
Psat2g001640 Pisum sativum HOM05D000001 ORTHO05D009494 1.4e-07 59.3 53 58.5
FvH4_5g30430 Fragaria vesca HOM05D000001 ORTHO05D009494 1.8e-07 58.9 49 57.1
FAN18G1238 Fragaria x ananassa HOM05D000001 ORTHO05D009494 1.8e-07 58.9 49 57.1
Glyma.02G309700 Glycine max HOM05D000001 ORTHO05D009494 1.8e-07 58.9 53 60.4
GSVIVG01000968001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.8e-07 58.9 61 37.7
Glyma.14G003000 Glycine max HOM05D000001 ORTHO05D009494 2.4e-07 58.5 53 58.5
Aqoxy6G01162 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 4.0e-07 57.8 57 49.1
FAN08G2373 Fragaria x ananassa HOM05D000001 ORTHO05D009494 4.0e-07 57.8 48 58.3
TPR.G33477 Trifolium pratense HOM05D000001 ORTHO05D009494 5.2e-07 57.4 55 56.4
Ca_06493_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009494 6.8e-07 57.0 54 55.6
LjContig00081g0014444 Lotus japonicus HOM05D000001 ORTHO05D009494 6.8e-07 57.0 58 53.4
Cc07_g15840 Coffea canephora HOM05D000001 ORTHO05D009295 8.9e-07 56.6 50 50.0
Sopen03g033060 Solanum pennellii HOM05D000001 ORTHO05D000003 8.9e-07 56.6 62 41.9
Actinidia30600 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.5e-06 55.8 56 41.1
Potri.007G021700 Populus trichocarpa HOM05D000001 ORTHO05D000003 1.5e-06 55.8 65 43.1
QL03p050084 Quercus lobata HOM05D000001 ORTHO05D000003 1.5e-06 55.8 59 39.0
DCAR_006349 Daucus carota HOM05D000001 ORTHO05D000003 2.0e-06 55.5 46 50.0
Sopen04g023880 Solanum pennellii HOM05D000117 ORTHO05D000070 2.0e-06 55.5 51 49.0
TPR.G15555 Trifolium pratense HOM05D000001 ORTHO05D000003 2.0e-06 55.5 55 47.3
Os05g0439300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 2.6e-06 55.1 52 46.2
Solyc03g114010.3 Solanum lycopersicum HOM05D000001 ORTHO05D000003 2.6e-06 55.1 60 40.0
PGSC0003DMG400024482 Solanum tuberosum HOM05D000001 ORTHO05D000003 2.6e-06 55.1 55 43.6
CANSAT01G0165 Cannabis sativa HOM05D000001 ORTHO05D000003 3.4e-06 54.7 57 49.1
CANSAT01G0785 Cannabis sativa HOM05D000001 ORTHO05D000003 3.4e-06 54.7 57 49.1
Lj5C111T13 Lonicera japonica HOM05D000001 ORTHO05D013776 3.4e-06 54.7 54 46.3
CSS0005729 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D006238 4.4e-06 54.3 48 45.8
FvH4_4g22970 Fragaria vesca HOM05D000001 ORTHO05D000003 4.4e-06 54.3 59 35.6
FAN12G2372 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.4e-06 54.3 59 35.6
FAN17G1545 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.4e-06 54.3 59 35.6
MBI01_g11648_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 4.4e-06 54.3 48 41.7
Nitab4.5_0009569g0020 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.4e-06 54.3 60 40.0
Sabra07G0018800 Salix brachista HOM05D000001 ORTHO05D000003 4.4e-06 54.3 65 41.5
SGA_v2.0_scaffold10G05181 Striga asiatica HOM05D000001 ORTHO05D022897 4.4e-06 54.3 58 44.8
GSVIVG01019408001 Vitis vinifera HOM05D000001 ORTHO05D000003 4.4e-06 54.3 53 41.5
Aqoxy6G01638 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 5.8e-06 53.9 56 42.9
Cpa.g.sc7.223 Carica papaya HOM05D000001 ORTHO05D000003 5.8e-06 53.9 50 42.0
Cfa009428 Carpinus fangiana HOM05D000001 ORTHO05D000003 5.8e-06 53.9 59 39.0
MBI15_g33461_MAGBIO Magnolia biondii HOM05D003257 ORTHO05D003749 5.8e-06 53.9 56 42.9
Prupe.1G218200 Prunus persica HOM05D000001 ORTHO05D000003 5.8e-06 53.9 59 39.0
Actinidia04902 Actinidia chinensis HOM05D000001 ORTHO05D009295 7.6e-06 53.5 48 47.9
Actinidia39525 Actinidia chinensis HOM05D000001 ORTHO05D006238 7.6e-06 53.5 48 43.8
AagrBONN_evm.TU.Sc2ySwM_344.3292 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.6e-06 53.5 55 49.1
arahy.Tifrunner.gnm1.ann1.7B1BNL Arachis hypogaea HOM05D000001 ORTHO05D000003 7.6e-06 53.5 55 43.6
Haze_12479 Corylus avellana HOM05D000001 ORTHO05D000003 7.6e-06 53.5 59 37.3
MD03G1042100 Malus domestica HOM05D000001 ORTHO05D011563 7.6e-06 53.5 55 43.6
Psat7g000440 Pisum sativum HOM05D000001 ORTHO05D000003 7.6e-06 53.5 51 45.1
Rhsim12G0018300 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.6e-06 53.5 61 36.1
RcHm_v2.0_Chr7g0181221 Rosa chinensis HOM05D000001 ORTHO05D000003 7.6e-06 53.5 48 43.8
ATR0188G021 Amborella trichopoda HOM05D000001 ORTHO05D038315 9.9e-06 53.1 48 45.8
AagrBONN_evm.TU.Sc2ySwM_228.1594 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.9e-06 53.1 55 43.6
Aqoxy1G01572 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 9.9e-06 53.1 56 41.1
arahy.Tifrunner.gnm1.ann1.Q8WFXK Arachis hypogaea HOM05D000001 ORTHO05D009494 9.9e-06 53.1 55 54.5
EL10Ac6g13335 Beta vulgaris HOM05D000001 ORTHO05D010781 9.9e-06 53.1 47 46.8
CSS0011746 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 9.9e-06 53.1 56 41.1
HanXRQChr14g0462951 Helianthus annuus HOM05D000001 ORTHO05D000003 9.9e-06 53.1 50 46.0
Manes.01G138200 Manihot esculenta HOM05D000001 ORTHO05D000003 9.9e-06 53.1 58 43.1
Nn8g39300 Nelumbo nucifera HOM05D000001 ORTHO05D009069 9.9e-06 53.1 47 42.6
RcHm_v2.0_Chr4g0429241 Rosa chinensis HOM05D000001 ORTHO05D000003 9.9e-06 53.1 59 39.0
SEGI_00657 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 9.9e-06 53.1 56 41.1


User provided reference genes

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