Gene: AT3G22150

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G22150
  • Transcript Identifier AT3G22150.2
  • Gene Type Coding gene
  • Location Chr3 : 7813028-7815490 : positive

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G22150.2
  • Alias AEF1,ATPF EDITING FACTOR 1
  • uniprot Q9LIE7

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48288 Blast hits to 14244 proteins in 270 species: Archae - 2; Bacteria - 15; Metazoa - 107; Fungi - 102; Plants - 47393; Viruses - 0; Other Eukaryotes - 669 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080156
IMP
Gene Ontologymitochondrial mRNA modification1
GO:1900865
IMP
Gene Ontologychloroplast RNA modification1
GO:0009451
IBA
Gene OntologyRNA modification2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003867
IMP
Gene Ontology4-aminobutyrate transaminase activity3
GO:0003729
IDA
Gene OntologymRNA binding4
GO:0003723
IBA
Gene OntologyRNA binding2
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IMP
ISM
Gene Ontologychloroplast1
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
IDA
Gene Ontologyplastid1
GO:0043231
IBA
Gene Ontologyintracellular membrane-bounded organelle2
GO:0005739
IBA
Gene Ontologymitochondrion2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR002885 Pentatricopeptide repeat
Mapman id Description
16.11.3.3.4.43 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (AEF1)