Gene: Solyc11g017370.3

General Information

Structural Information

Species Solanum lycopersicum
Gene Identifier Solyc11g017370.3
Transcript Identifier Solyc11g017370.3.1
Gene Type Coding gene
Location SL4.0ch11 : 8339457-8341964 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000001
#Genes/#Species 35287/100
Phylogenetic origin

ID ORTHO05D009494
#Genes/#Species 100/84
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid Solyc11g017370.3.1
uniprot A0A3Q7IT57
gene_id Solyc11g017370

Descriptions

Short descriptions
Ortholog descriptions

Description Pentatricopeptide repeat-containing protein, chloroplastic (AHRD V3.3 *** A0A2G2WYH4_CAPBA)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0080156	ISO	PLAZA Integrative Orthology	mitochondrial mRNA modification	AT3G22150
GO:1900865	ISO	PLAZA Integrative Orthology	chloroplast RNA modification	AT3G22150

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0003867	ISO	PLAZA Integrative Orthology	4-aminobutyrate transaminase activity	AT3G22150
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	AT3G22150

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT3G22150
GO:0009536	ISO	PLAZA Integrative Orthology	plastid	AT3G22150

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR002885	Pentatricopeptide repeat

Mapman id	Description
16.11.3.3.4.43	RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (AEF1)