Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.3e-171 605.5 311 100.0
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 2.5e-170 602.1 311 99.7
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 8.9e-168 593.6 311 97.4
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.9e-157 559.3 311 91.3
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.5e-156 555.1 311 91.3
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.9e-149 532.7 311 89.4
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.2e-148 530.0 310 87.7
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.5e-138 495.7 313 84.7
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.1e-130 470.3 311 77.2
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 2.8e-129 465.7 313 79.9
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 1.3e-126 456.8 313 74.4
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 8.4e-126 454.1 311 75.2
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 4.2e-125 451.8 316 75.0
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.6e-124 449.9 316 75.9
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 2.7e-124 449.1 316 74.4
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 2.7e-124 449.1 316 74.7
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 1.0e-123 447.2 311 74.6
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 3.0e-123 445.7 314 73.6
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 3.9e-123 445.3 311 74.0
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.1e-122 443.7 312 74.4
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 2.5e-122 442.6 309 73.1
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 2.5e-122 442.6 311 76.2
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 2.5e-122 442.6 312 74.4
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 3.3e-122 442.2 311 73.6
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 3.3e-122 442.2 311 73.3
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 4.3e-122 441.8 305 75.1
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 5.6e-122 441.4 310 74.2
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 1.3e-121 440.3 311 73.6
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.6e-121 439.9 312 74.0
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 2.1e-121 439.5 311 74.3
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.1e-121 439.5 313 73.2
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.8e-121 439.1 312 74.0
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.8e-121 439.1 312 74.0
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 8.2e-121 437.6 321 72.6
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 1.1e-120 437.2 316 73.4
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.4e-120 436.8 309 73.1
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 1.8e-120 436.4 311 74.3
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 2.4e-120 436.0 315 72.7
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.4e-120 436.0 313 73.5
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 5.3e-120 434.9 313 73.5
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 5.3e-120 434.9 313 73.5
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 5.3e-120 434.9 318 71.7
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 9.0e-120 434.1 311 73.3
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 3.4e-119 432.2 311 73.0
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 5.8e-119 431.4 317 71.0
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 7.6e-119 431.0 313 73.2
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 1.0e-118 430.6 314 72.3
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 1.0e-118 430.6 314 72.3
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.7e-118 429.9 311 73.3
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 1.7e-118 429.9 316 70.6
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 2.2e-118 429.5 323 69.7
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 8.4e-118 427.6 310 71.6
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.1e-117 427.2 318 71.7
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 5.5e-117 424.9 311 71.4
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 3.5e-116 422.2 312 70.8
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.5e-116 422.2 315 71.1
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 3.5e-116 422.2 312 71.2
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 6.1e-116 421.4 316 71.5
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 7.9e-116 421.0 311 72.3
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.0e-115 420.6 313 70.0
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.0e-115 420.6 313 70.0
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 6.7e-115 417.9 316 69.9
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 8.7e-115 417.5 312 69.6
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 1.1e-114 417.2 318 69.2
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 1.5e-114 416.8 313 69.6
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 1.9e-114 416.4 311 70.4
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 2.5e-114 416.0 312 70.5
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.7e-114 414.8 314 68.8
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 7.4e-114 414.5 315 69.8
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.6e-113 413.3 313 69.6
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.6e-113 413.3 312 68.9
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 6.3e-113 411.4 311 69.5
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 8.2e-113 411.0 311 69.1
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.1e-112 410.6 312 68.3
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.4e-112 410.2 311 69.8
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.4e-112 410.2 311 69.8
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.4e-112 410.2 316 67.7
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 1.8e-112 409.8 354 63.3
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 4.1e-112 408.7 316 68.0
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 5.3e-112 408.3 311 70.1
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 5.3e-112 408.3 311 70.1
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 5.3e-112 408.3 311 70.1
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 5.3e-112 408.3 312 69.2
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 9.0e-112 407.5 311 69.8
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 2.0e-111 406.4 311 68.5
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 2.6e-111 406.0 311 69.1
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 7.7e-111 404.4 351 64.1
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 7.7e-111 404.4 311 69.1
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 7.7e-111 404.4 313 68.4
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 2.9e-110 402.5 325 67.1
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.9e-109 399.8 316 67.4
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 4.2e-109 398.7 270 77.4
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 7.2e-109 397.9 316 66.5
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 6.1e-108 394.8 298 71.1
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.0e-107 392.5 314 67.2
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 8.2e-105 384.4 336 63.7
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.5e-103 380.2 311 66.2
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.9e-101 373.2 224 83.0
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.5e-101 372.9 238 79.4
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 2.7e-100 369.4 270 74.1
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.7e-100 369.4 289 67.8
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 3.6e-100 369.0 351 57.3
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 1.8e-99 366.7 331 61.6
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 5.1e-99 365.2 340 59.1
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.2e-97 359.8 247 74.9
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.2e-95 354.0 203 86.7
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.8e-94 349.0 311 63.0
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.5e-93 345.1 265 70.6
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.2e-92 344.0 324 55.9
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 2.7e-92 342.8 306 57.8
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.8e-91 340.1 211 80.6
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 5.3e-88 328.6 376 52.7
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.7e-87 324.7 273 63.4
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 1.2e-84 317.4 311 58.8
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 2.3e-83 313.2 311 54.7
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 4.0e-83 312.4 287 59.9
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 3.7e-81 305.8 185 82.7
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.4e-80 303.9 311 54.3
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 4.1e-80 302.4 249 71.5
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 2.7e-76 289.7 230 73.0
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.5e-69 267.3 191 80.6
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 2.3e-67 260.0 414 43.0
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 5.7e-66 255.4 313 54.0
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 6.3e-65 251.9 294 51.0
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.5e-53 214.2 278 54.0
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 2.6e-50 203.4 272 48.9
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.3e-49 201.1 226 48.7
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 4.1e-48 196.1 117 84.6
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 5.2e-43 179.1 253 44.7
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.4e-40 171.0 192 51.6
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 2.4e-40 170.2 202 48.5
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.6e-39 167.5 139 66.9
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.0e-38 163.3 95 85.3
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 4.7e-36 156.0 96 85.4
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 8.9e-35 151.8 126 63.5
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 8.9e-35 151.8 126 63.5
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.2e-34 151.4 122 67.2
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.8e-34 149.1 93 83.9
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.2e-31 141.4 80 91.2
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.5e-29 134.4 191 43.5
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 4.9e-25 119.4 239 38.5
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 6.0e-23 112.5 99 62.6
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 1.3e-22 111.3 151 47.0
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.0e-19 99.8 99 59.6
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.5e-18 97.8 62 82.3
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 6.5e-09 65.9 41 65.9
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 1.9e-08 64.3 38 68.4
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 4.2e-08 63.2 43 72.1
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 3.5e-07 60.1 62 56.5
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 3.5e-07 60.1 128 35.2
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.0e-06 58.5 57 61.4


User provided reference genes

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