Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-82 308.9 148 100.0
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.7e-72 273.5 143 91.6
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-69 265.0 143 88.1
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-69 265.0 143 88.8
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-64 248.8 143 81.1
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.1e-58 227.6 143 76.9
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.0e-57 226.9 135 80.0
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.8e-55 218.8 143 72.0
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-54 216.9 144 72.2
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.1e-54 216.9 144 72.2
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.4e-54 215.7 144 71.5
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 7.0e-54 214.2 143 69.2
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.7e-53 212.2 143 75.5
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.5e-53 211.5 143 65.7
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 1.7e-52 209.5 143 67.8
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.1e-51 206.8 144 68.1
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 2.5e-51 205.7 143 67.8
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 3.2e-51 205.3 143 65.7
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 3.2e-51 205.3 143 67.1
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.2e-51 204.9 141 70.2
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 9.4e-51 203.8 144 67.4
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 9.4e-51 203.8 143 65.0
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 9.4e-51 203.8 143 64.3
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 2.1e-50 202.6 143 67.8
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.1e-50 202.6 143 65.7
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.6e-50 201.8 143 64.3
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 4.7e-50 201.4 143 65.7
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 6.1e-50 201.1 141 65.2
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 6.1e-50 201.1 143 65.0
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 8.0e-50 200.7 143 65.0
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 8.0e-50 200.7 143 65.7
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.8e-49 199.5 143 64.3
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 2.3e-49 199.1 143 65.7
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.3e-49 199.1 143 63.6
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.0e-49 198.7 143 65.0
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.0e-49 198.7 143 65.7
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 3.0e-49 198.7 143 65.7
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 3.0e-49 198.7 143 64.3
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.0e-49 198.7 143 64.3
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.0e-49 198.7 143 64.3
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 4.0e-49 198.4 143 64.3
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 5.2e-49 198.0 138 68.1
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 6.8e-49 197.6 145 65.5
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 8.8e-49 197.2 143 62.9
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 8.8e-49 197.2 143 63.6
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.5e-48 196.4 143 63.6
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.0e-48 196.1 143 62.9
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 2.0e-48 196.1 143 62.9
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 2.6e-48 195.7 144 63.2
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.6e-48 195.7 143 67.1
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.6e-48 195.7 143 62.9
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 4.4e-48 194.9 143 61.5
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 5.7e-48 194.5 143 62.2
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 5.7e-48 194.5 143 62.9
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 5.7e-48 194.5 143 62.9
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 7.5e-48 194.1 143 62.9
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 9.8e-48 193.7 142 62.7
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 9.8e-48 193.7 142 62.7
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 9.8e-48 193.7 143 63.6
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.1e-46 190.3 144 61.1
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.1e-46 190.3 143 61.5
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 2.4e-46 189.1 143 59.4
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.4e-46 189.1 138 64.5
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 2.4e-46 189.1 144 61.8
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 3.1e-46 188.7 144 60.4
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.0e-46 187.6 143 60.1
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 9.1e-46 187.2 142 61.3
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.0e-45 186.0 143 58.7
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 2.0e-45 186.0 143 58.7
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 2.7e-45 185.7 143 58.0
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 5.9e-45 184.5 143 57.3
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 5.9e-45 184.5 143 57.3
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 1.0e-44 183.7 162 56.2
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.0e-44 183.7 135 66.7
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.7e-44 183.0 143 58.0
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.7e-44 183.0 143 57.3
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 2.9e-44 182.2 143 59.4
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 6.5e-44 181.0 143 57.3
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 8.6e-44 180.6 143 54.5
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 8.6e-44 180.6 143 55.2
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 8.6e-44 180.6 143 55.9
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.1e-43 180.3 109 78.0
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.9e-43 179.5 143 60.1
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.5e-43 179.1 143 58.0
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 3.3e-43 178.7 153 56.9
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 4.2e-43 178.3 143 61.5
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 4.2e-43 178.3 139 55.4
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 7.2e-43 177.6 143 54.5
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.2e-42 176.8 143 60.1
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 2.1e-42 176.0 143 53.1
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 4.7e-42 174.9 143 56.6
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.4e-41 173.3 144 54.9
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 2.3e-41 172.6 145 55.2
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 4.0e-41 171.8 145 51.7
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 4.0e-41 171.8 138 55.8
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 4.0e-41 171.8 145 54.5
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 6.8e-41 171.0 171 51.5
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.2e-40 170.2 143 53.8
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.5e-40 169.9 145 51.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 2.6e-40 169.1 96 88.5
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 4.4e-40 168.3 138 55.8
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 4.4e-40 168.3 143 54.5
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 9.8e-40 167.2 143 53.1
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 9.8e-40 167.2 143 53.1
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 9.8e-40 167.2 143 53.1
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 2.2e-39 166.0 143 54.5
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 2.8e-39 165.6 148 50.0
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 3.7e-39 165.2 143 51.7
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 8.3e-39 164.1 143 51.0
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.1e-38 163.7 143 53.8
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 2.4e-38 162.5 143 51.0
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 2.4e-38 162.5 143 51.7
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.7e-37 159.1 104 74.0
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 1.9e-35 152.9 138 57.2
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.3e-35 151.0 148 54.1
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.2e-34 150.2 120 55.0
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-34 149.8 94 81.9
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 4.0e-33 145.2 151 44.4
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 3.4e-32 142.1 156 42.9
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.7e-31 139.8 143 49.7
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 7.0e-30 134.4 145 43.4
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.1e-27 127.1 138 42.8
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.6e-26 123.2 143 40.6
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 6.8e-25 117.9 143 39.9
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.2e-24 117.1 91 61.5
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.7e-23 113.2 144 39.6
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 4.9e-23 111.7 87 59.8
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 4.9e-23 111.7 87 59.8
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.9e-23 111.7 66 84.8
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 6.4e-23 111.3 92 60.9
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 6.4e-23 111.3 146 34.2
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 8.3e-23 110.9 94 55.3
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.1e-22 110.5 93 54.8
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-22 110.2 61 88.5
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.9e-22 109.8 90 57.8
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 4.1e-22 108.6 143 38.5
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.7e-20 103.2 117 39.3
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.7e-20 103.2 85 57.6
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-19 99.8 66 74.2
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.3e-19 99.0 114 45.6
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 9.5e-19 97.4 51 90.2
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 3.1e-17 92.4 71 62.0
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 2.0e-16 89.7 71 62.0
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.6e-16 89.4 52 75.0
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-16 89.0 47 89.4
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.7e-15 86.7 66 63.6
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.9e-14 83.2 52 65.4
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.6e-13 80.1 51 72.5
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 5.6e-11 71.6 47 70.2
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 2.2e-07 59.7 91 38.5
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 4.9e-07 58.5 47 63.8


User provided reference genes

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