Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 2.6e-239 831.6 413 100.0
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 2.2e-230 802.0 430 94.9
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 7.9e-196 687.2 488 74.0
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 1.5e-191 672.9 496 71.8
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 1.5e-178 629.8 744 51.6
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 6.7e-171 604.4 454 70.5
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 5.5e-165 584.7 508 64.4
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 3.6e-156 555.4 393 73.8
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 1.2e-143 513.8 478 57.5
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 9.4e-141 504.2 469 56.9
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 8.0e-140 501.1 473 55.8
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 6.8e-139 498.0 478 55.4
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 6.3e-137 491.5 494 54.5
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 8.0e-132 474.6 473 52.6
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 1.1e-128 464.2 465 52.9
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.2e-127 460.7 479 51.4
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 3.5e-127 459.1 443 52.8
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 2.3e-126 456.4 467 51.0
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 3.8e-126 455.7 462 51.7
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.1e-124 449.9 476 50.2
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 2.1e-124 449.9 437 53.1
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 6.1e-124 448.4 437 52.6
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 1.0e-123 447.6 483 49.9
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.4e-123 447.2 474 51.9
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 5.2e-123 445.3 500 49.2
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 8.9e-123 444.5 443 54.2
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 1.2e-122 444.1 473 49.0
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 2.0e-122 443.4 431 53.1
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 8.3e-121 438.0 461 50.1
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 8.3e-121 438.0 478 49.0
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 3.5e-119 432.6 438 52.1
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 3.0e-118 429.5 487 47.2
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 3.0e-118 429.5 478 47.3
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 8.6e-118 427.9 466 48.5
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 8.6e-118 427.9 466 48.5
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 8.6e-118 427.9 436 51.4
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 1.5e-117 427.2 433 51.5
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 1.9e-117 426.8 436 50.9
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 2.5e-117 426.4 476 48.9
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 3.3e-117 426.0 471 48.0
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 4.3e-117 425.6 359 59.9
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 5.6e-117 425.2 437 50.8
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 7.3e-117 424.9 434 51.4
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 9.5e-117 424.5 495 47.3
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 2.1e-116 423.3 478 46.7
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 8.0e-116 421.4 466 48.5
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 2.6e-114 416.4 541 43.3
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 3.7e-113 412.5 479 47.0
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 3.7e-113 412.5 539 44.0
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 6.4e-113 411.8 489 47.0
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 2.4e-112 409.8 323 62.5
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 5.4e-112 408.7 440 48.4
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 1.2e-111 407.5 550 42.5
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 1.6e-111 407.1 440 48.2
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 4.6e-111 405.6 524 43.1
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 2.3e-110 403.3 622 39.5
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 8.6e-110 401.4 477 46.8
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 1.9e-109 400.2 477 45.3
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 5.6e-109 398.7 448 49.6
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 7.3e-109 398.3 467 46.5
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 1.2e-108 397.5 437 47.6
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 1.6e-108 397.1 452 47.6
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.6e-108 396.0 446 48.9
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 4.7e-108 395.6 452 46.2
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 6.2e-108 395.2 454 47.1
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 2.3e-107 393.3 431 48.0
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 6.4e-105 385.2 432 48.1
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 2.4e-104 383.3 433 48.0
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 7.1e-104 381.7 454 46.9
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 7.1e-104 381.7 463 45.8
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 2.1e-103 380.2 331 56.2
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 2.1e-103 380.2 432 47.2
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 6.0e-103 378.6 427 47.8
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 5.1e-102 375.6 453 46.8
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 6.6e-102 375.2 453 47.0
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 9.5e-101 371.3 519 41.2
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.1e-100 370.2 479 43.8
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 1.4e-99 367.5 479 44.3
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 6.8e-99 365.2 478 43.9
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 7.6e-98 361.7 584 37.7
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 6.4e-97 358.6 470 45.5
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 2.4e-96 356.7 435 44.8
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 2.4e-96 356.7 583 37.4
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 2.4e-96 356.7 474 42.2
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 4.1e-96 355.9 404 49.0
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 7.1e-96 355.1 429 45.0
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 1.2e-95 354.4 328 54.9
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.6e-95 354.0 459 45.1
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.7e-95 353.2 588 36.9
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.5e-95 352.8 603 36.3
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 7.8e-95 351.7 451 44.1
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 3.0e-94 349.7 257 63.0
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.9e-94 349.4 232 68.1
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.1e-93 347.8 232 67.7
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 2.5e-93 346.7 268 60.8
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 2.5e-93 346.7 361 49.9
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 3.3e-93 346.3 449 44.5
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 1.2e-92 344.4 480 42.3
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.1e-92 343.6 268 60.8
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 8.1e-92 341.7 376 49.2
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.4e-88 330.9 386 44.6
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 1.9e-88 330.5 377 47.5
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 9.3e-88 328.2 468 41.2
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.6e-87 327.4 355 47.9
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 2.1e-87 327.0 199 74.9
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 4.6e-87 325.9 377 47.2
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.0e-86 324.7 401 47.6
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 1.8e-83 313.9 580 35.7
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 7.6e-82 308.5 419 42.7
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.3e-81 307.8 462 43.1
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 2.9e-81 306.6 236 61.9
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 4.6e-79 299.3 367 48.2
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 1.3e-78 297.7 422 42.7
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 4.3e-77 292.7 433 41.1
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 3.6e-76 289.7 225 60.9
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 8.4e-73 278.5 273 54.2
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 5.6e-69 265.8 436 38.1
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 1.6e-68 264.2 331 46.8
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.0e-66 257.3 333 43.2
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 1.9e-64 250.8 346 42.2
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 9.3e-64 248.4 471 34.6
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 1.0e-62 245.0 233 50.2
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.0e-62 245.0 192 59.9
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 1.8e-62 244.2 506 33.6
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 9.6e-61 238.4 340 40.6
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 3.7e-52 209.9 133 69.2
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.2e-49 200.7 238 48.7
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 1.2e-47 194.9 280 42.1
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 5.2e-38 162.9 184 43.5
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 5.3e-35 152.9 178 45.5
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 1.3e-33 148.3 223 45.3
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 1.3e-33 148.3 412 30.1
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 1.4e-30 138.3 224 39.7
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 1.8e-30 137.9 221 40.3
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 5.7e-29 132.9 159 47.8
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 7.5e-29 132.5 114 56.1
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.4e-27 127.5 183 45.4
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 2.2e-17 94.4 64 60.9
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 5.0e-17 93.2 69 53.6
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 8.5e-17 92.4 75 56.0
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 4.2e-16 90.1 74 54.1
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 3.6e-15 87.0 76 53.9
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.8e-14 84.7 81 50.6
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 8.8e-14 82.4 105 37.1
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.6e-13 80.9 78 50.0
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 1.4e-11 75.1 116 36.2
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.2e-10 72.0 78 44.9
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.3e-09 67.8 176 30.7
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 7.3e-08 62.8 121 35.5
ATR0751G025 Amborella trichopoda HOM05D004664 ORTHO05D005526 3.0e-06 57.4 60 43.3


User provided reference genes

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