Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 7.2e-162 573.9 309 100.0
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 2.2e-158 562.4 309 98.7
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 5.9e-156 554.3 312 96.8
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 1.4e-136 490.0 312 86.2
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.0e-135 486.1 315 82.2
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.9e-134 482.3 316 82.6
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 2.1e-124 449.5 313 76.7
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 6.6e-123 444.5 295 79.7
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 1.6e-116 423.3 297 78.8
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 1.9e-114 416.4 319 74.6
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 7.3e-114 414.5 268 81.3
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 1.3e-113 413.7 323 72.4
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 6.2e-113 411.4 310 71.3
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 1.2e-111 407.1 320 69.1
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 2.6e-111 406.0 310 73.2
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 3.4e-111 405.6 296 75.3
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 4.5e-111 405.2 290 75.5
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 1.7e-110 403.3 270 78.9
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 2.9e-110 402.5 301 74.4
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 2.9e-110 402.5 312 72.4
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 3.8e-110 402.1 312 71.8
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 3.8e-110 402.1 315 72.4
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 4.9e-110 401.7 270 80.4
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 8.4e-110 401.0 312 71.2
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 7.1e-109 397.9 313 67.1
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 7.1e-109 397.9 323 70.0
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 1.2e-108 397.1 309 70.9
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 3.5e-108 395.6 309 70.2
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 1.0e-107 394.0 309 71.5
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 1.3e-107 393.7 317 66.2
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 6.7e-107 391.3 273 76.2
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 8.7e-107 391.0 317 71.6
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.9e-106 389.8 265 79.2
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 2.5e-106 389.4 310 71.6
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 3.3e-106 389.0 310 69.0
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 5.6e-106 388.3 292 74.3
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 7.4e-106 387.9 314 69.4
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 1.3e-105 387.1 314 69.1
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 2.8e-105 386.0 314 70.7
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 1.1e-104 384.0 302 72.5
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 4.0e-104 382.1 250 83.2
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 5.3e-104 381.7 329 66.9
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 1.2e-103 380.6 316 69.0
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 3.4e-103 379.0 296 72.6
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 4.5e-103 378.6 295 67.5
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 4.5e-103 378.6 284 73.2
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 1.0e-102 377.5 293 68.3
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 1.0e-102 377.5 250 81.6
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 1.0e-102 377.5 297 66.7
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 2.9e-102 375.9 311 66.9
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 2.9e-102 375.9 298 67.1
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 3.8e-102 375.6 312 67.3
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 4.9e-102 375.2 292 68.2
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 1.1e-101 374.0 311 69.5
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 1.6e-100 370.2 300 71.0
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 2.1e-100 369.8 310 67.7
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 3.5e-100 369.0 315 67.9
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 6.0e-100 368.2 329 64.4
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 7.9e-100 367.9 317 68.1
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 1.3e-99 367.1 297 68.4
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 5.1e-99 365.2 316 67.1
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 6.7e-99 364.8 286 69.2
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 8.7e-99 364.4 297 71.0
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 1.9e-98 363.2 303 65.0
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 2.5e-98 362.8 268 70.9
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 2.5e-98 362.8 316 66.1
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 4.3e-98 362.1 314 65.9
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 5.7e-98 361.7 268 69.8
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 5.7e-98 361.7 271 73.4
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 1.3e-97 360.5 321 64.5
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 2.1e-97 359.8 274 69.7
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 2.1e-97 359.8 307 63.5
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 3.7e-97 359.0 280 71.8
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 6.2e-97 358.2 247 73.3
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 4.1e-96 355.5 274 68.2
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 6.9e-96 354.8 327 62.7
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 2.0e-95 353.2 310 67.1
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 4.5e-95 352.1 274 71.9
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 5.8e-95 351.7 329 63.5
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 1.3e-94 350.5 290 65.9
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 1.7e-94 350.1 329 63.2
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 8.4e-94 347.8 259 70.3
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 1.1e-93 347.4 262 73.3
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 2.5e-93 346.3 396 52.0
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 3.2e-93 345.9 225 78.7
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 1.9e-90 336.7 227 78.0
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 1.9e-90 336.7 313 62.0
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 7.4e-90 334.7 253 68.4
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 4.8e-89 332.0 310 64.2
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 1.4e-88 330.5 265 65.7
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 4.1e-88 328.9 270 67.4
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 5.9e-87 325.1 265 61.1
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 5.0e-86 322.0 315 61.0
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 5.0e-86 322.0 225 73.8
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 5.0e-86 322.0 225 73.8
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 1.4e-83 313.9 250 64.0
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 8.8e-83 311.2 309 60.2
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 2.0e-82 310.1 228 73.2
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 3.3e-82 309.3 186 83.9
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 2.2e-81 306.6 233 72.5
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 2.2e-78 296.6 311 59.8
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 6.3e-73 278.5 320 53.8
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 8.5e-70 268.1 281 54.4
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 3.2e-69 266.2 258 58.5
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 1.6e-68 263.8 186 78.5
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 1.5e-66 257.3 218 68.8
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 7.7e-63 245.0 262 56.9
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 1.6e-60 237.3 222 64.4
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 2.1e-60 236.9 254 52.4
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 5.9e-55 218.8 252 53.2
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 3.8e-54 216.1 296 43.9
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 1.3e-49 201.1 196 56.6
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 4.3e-45 186.0 163 64.4
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 2.6e-42 176.8 172 51.7
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 1.9e-37 160.6 129 63.6
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 1.0e-35 154.8 173 55.5
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 1.8e-35 154.1 127 62.2
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 3.2e-32 143.3 99 70.7
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 2.0e-31 140.6 135 68.1
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 5.8e-26 122.5 120 58.3
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 3.2e-24 116.7 217 36.9
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.7e-22 110.9 78 73.1
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 6.4e-17 92.4 101 53.5
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 2.7e-15 87.0 69 58.0
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 2.3e-14 84.0 111 46.8
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 3.0e-14 83.6 72 63.9
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 1.1e-08 65.1 65 58.5
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 9.3e-08 62.0 35 71.4
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 1.6e-07 61.2 65 58.5
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 4.6e-07 59.7 46 71.7
Lj9C654T3 Lonicera japonica HOM05D006016 ORTHO05D007553 4.6e-07 59.7 46 71.7
Medtr1g072620 Medicago truncatula HOM05D006016 ORTHO05D007553 6.6e-06 55.8 49 59.2


User provided reference genes

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