Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g064770.1 Solanum lycopersicum HOM05D002634 ORTHO05D037727 1.3e-78 296.2 141 100.0
Solyc05g014460.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.5e-21 106.7 121 49.6
Duzib147G0499 Durio zibethinus HOM05D002634 ORTHO05D003100 1.3e-17 93.6 82 52.4
PGR004G2669 Punica granatum HOM05D002634 ORTHO05D003100 1.2e-15 87.0 109 43.1
Sopen12g023530 Solanum pennellii HOM05D002634 ORTHO05D003100 1.2e-15 87.0 104 45.2
Actinidia08243 Actinidia chinensis HOM05D002634 ORTHO05D003100 2.1e-15 86.3 109 44.0
Ca_13940_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 2.7e-15 85.9 109 42.2
Glyma.17G165900 Glycine max HOM05D002634 ORTHO05D003100 2.7e-15 85.9 109 42.2
THA.LOC104819248 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 2.7e-15 85.9 108 43.5
ClCG01G017150 Citrullus lanatus HOM05D002634 ORTHO05D003100 3.6e-15 85.5 109 42.2
MELO3C007593.2 Cucumis melo HOM05D002634 ORTHO05D003100 3.6e-15 85.5 109 42.2
CsaV3_6G043670 Cucumis sativus L. HOM05D002634 ORTHO05D003100 3.6e-15 85.5 109 42.2
TWI73G0945 Tripterygium wilfordii HOM05D002634 ORTHO05D003100 3.6e-15 85.5 109 44.0
Phvul.003G239000 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 6.1e-15 84.7 109 41.3
Actinidia03814 Actinidia chinensis HOM05D002634 ORTHO05D003100 1.0e-14 84.0 109 43.1
Sopen02g002170 Solanum pennellii HOM05D002634 ORTHO05D037727 1.0e-14 84.0 76 55.3
Oeu011602.1 Olea europaea HOM05D002634 ORTHO05D003100 1.4e-14 83.6 108 40.7
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 1.8e-14 83.2 98 45.9
FvH4_1g16940 Fragaria vesca HOM05D002634 ORTHO05D003100 1.8e-14 83.2 109 41.3
FAN19G3064 Fragaria x ananassa HOM05D002634 ORTHO05D003100 1.8e-14 83.2 109 41.3
FAN26G0639 Fragaria x ananassa HOM05D002634 ORTHO05D003100 1.8e-14 83.2 109 41.3
FAN28G0371 Fragaria x ananassa HOM05D002634 ORTHO05D003100 1.8e-14 83.2 109 41.3
Gohir.A11G047800 Gossypium hirsutum HOM05D002634 ORTHO05D003100 2.3e-14 82.8 109 41.3
Atru.chr3.237 Acer truncatum HOM05D002634 ORTHO05D003100 3.0e-14 82.4 109 40.4
Glyma.05G100500 Glycine max HOM05D002634 ORTHO05D003100 3.9e-14 82.0 109 40.4
CiPaw.01G009600 Carya illinoinensis HOM05D002634 ORTHO05D003100 5.2e-14 81.6 107 41.1
TWI09G1405 Tripterygium wilfordii HOM05D002634 ORTHO05D003100 5.2e-14 81.6 109 44.0
MD02G1179800 Malus domestica HOM05D002634 ORTHO05D003100 8.8e-14 80.9 109 40.4
AL8G44010 Arabidopsis lyrata HOM05D002634 ORTHO05D003100 1.5e-13 80.1 109 39.4
arahy.Tifrunner.gnm1.ann1.KSX8X1 Arachis hypogaea HOM05D002634 ORTHO05D003100 1.5e-13 80.1 107 43.0
Thhalv10003834m.g Eutrema salsugineum HOM05D002634 ORTHO05D003100 2.0e-13 79.7 109 40.4
Duzib264G1043 Durio zibethinus HOM05D002634 ORTHO05D003100 5.7e-13 78.2 106 39.6
Sp2g29340 Schrenkiella parvula HOM05D002634 ORTHO05D003100 9.7e-13 77.4 108 39.8
COL.COLO4_11505 Corchorus olitorius HOM05D002634 ORTHO05D003100 2.2e-12 76.3 82 47.6
FAN23G0361 Fragaria x ananassa HOM05D002634 ORTHO05D003100 2.8e-12 75.9 128 35.2
Lalb_Chr16g0388841 Lupinus albus HOM05D002634 ORTHO05D003100 3.7e-12 75.5 109 37.6
Sopen12g030510 Solanum pennellii HOM05D002634 ORTHO05D003100 3.7e-12 75.5 122 43.4
Thecc.01G065500 Theobroma cacao HOM05D002634 ORTHO05D003100 4.8e-12 75.1 109 39.4
Lalb_Chr09g0334001 Lupinus albus HOM05D002634 ORTHO05D003100 8.2e-12 74.3 107 37.4
PGSC0003DMG400046191 Solanum tuberosum HOM05D002634 ORTHO05D030654 8.2e-12 74.3 87 44.8
BcaC04g23207 Brassica carinata HOM05D002634 ORTHO05D003100 1.1e-11 73.9 109 39.4
A09p09440 Brassica napus HOM05D002634 ORTHO05D003100 1.1e-11 73.9 109 39.4
C09p11120 Brassica napus HOM05D002634 ORTHO05D003100 1.1e-11 73.9 109 39.4
BolC9t54001H Brassica oleracea HOM05D002634 ORTHO05D003100 1.1e-11 73.9 109 39.4
BraA09t36593Z Brassica rapa HOM05D002634 ORTHO05D003100 1.1e-11 73.9 109 39.4
Sopen05g009550 Solanum pennellii HOM05D002634 ORTHO05D003100 1.1e-11 73.9 113 44.2
Sed0022856 Sechium edule HOM05D002634 ORTHO05D003100 1.8e-11 73.2 129 34.1
PGSC0003DMG400038331 Solanum tuberosum HOM05D002634 ORTHO05D003100 2.4e-11 72.8 91 49.5
Gohir.D11G051400 Gossypium hirsutum HOM05D002634 ORTHO05D003100 4.1e-11 72.0 109 38.5
Gorai.007G055800 Gossypium raimondii HOM05D002634 ORTHO05D003100 4.1e-11 72.0 109 38.5
Gohir.A02G154600 Gossypium hirsutum HOM05D002634 ORTHO05D003100 5.3e-11 71.6 109 38.5
Gohir.D03G025900 Gossypium hirsutum HOM05D002634 ORTHO05D003100 5.3e-11 71.6 109 37.6
CDE02G1419 Ceratophyllum demersum HOM05D002634 ORTHO05D003100 1.2e-10 70.5 135 31.9
Gorai.003G027600 Gossypium raimondii HOM05D002634 ORTHO05D003100 1.2e-10 70.5 109 37.6
Manes.13G116500 Manihot esculenta HOM05D002634 ORTHO05D003100 1.2e-10 70.5 109 38.5
Prupe.6G226500 Prunus persica HOM05D002634 ORTHO05D003100 1.6e-10 70.1 109 35.8
PGSC0003DMG400043199 Solanum tuberosum HOM05D002634 ORTHO05D003100 2.6e-10 69.3 89 48.3
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 3.5e-10 68.9 109 37.6
Sabra07G0044500 Salix brachista HOM05D002634 ORTHO05D003100 4.5e-10 68.6 109 37.6
GSVIVG01009402001 Vitis vinifera HOM05D002634 ORTHO05D003100 4.5e-10 68.6 88 46.6
MD15G1290400 Malus domestica HOM05D002634 ORTHO05D003100 5.9e-10 68.2 109 37.6
Manes.12G109000 Manihot esculenta HOM05D002634 ORTHO05D003100 1.0e-09 67.4 109 37.6
Haze_15337 Corylus avellana HOM05D002634 ORTHO05D003100 1.7e-09 66.6 109 36.7
Peaxi162Scf00160g00029 Petunia axillaris HOM05D002634 ORTHO05D003100 2.9e-09 65.9 93 45.2
EL10Ac6g15682 Beta vulgaris HOM05D002634 ORTHO05D003100 3.8e-09 65.5 109 34.9
Nitab4.5_0000934g0230 Nicotiana tabacum HOM05D002634 ORTHO05D003100 5.0e-09 65.1 89 41.6
Potri.005G144400 Populus trichocarpa HOM05D002634 ORTHO05D003100 5.0e-09 65.1 109 35.8
Actinidia22667 Actinidia chinensis HOM05D002634 ORTHO05D003100 1.5e-08 63.5 113 37.2
Potri.007G050100 Populus trichocarpa HOM05D002634 ORTHO05D003100 1.9e-08 63.2 108 35.2
RcHm_v2.0_Chr2g0107021 Rosa chinensis HOM05D002634 ORTHO05D003100 2.5e-08 62.8 109 33.9
Sed0007301 Sechium edule HOM05D002634 ORTHO05D003100 2.5e-08 62.8 109 33.9
Cpa.g.sc6.77 Carica papaya HOM05D002634 ORTHO05D003100 4.2e-08 62.0 39 69.2
BcaB04g20066 Brassica carinata HOM05D002634 ORTHO05D003100 7.2e-08 61.2 108 34.3
Cfa004076 Carpinus fangiana HOM05D002634 ORTHO05D003100 7.2e-08 61.2 109 34.9
AUR62038259 Chenopodium quinoa HOM05D002634 ORTHO05D003100 7.2e-08 61.2 109 33.9
Hund16370 Selenicereus undatus HOM05D002634 ORTHO05D003100 1.2e-07 60.5 109 34.9
Solyc12g088570.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.2e-07 60.5 98 40.8
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.6e-07 60.1 138 32.6
Psat4g083960 Pisum sativum HOM05D002634 ORTHO05D003100 2.1e-07 59.7 87 37.9
Solyc12g049100.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 3.6e-07 58.9 88 43.2
HPP92_020480 Vanilla planifolia HOM05D002634 ORTHO05D003100 3.6e-07 58.9 109 33.9
CSS0010477 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 6.1e-07 58.2 86 36.0
CSS0042779 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 6.1e-07 58.2 86 36.0
FvH4_2g33540 Fragaria vesca HOM05D002634 ORTHO05D003100 8.0e-07 57.8 92 37.0
HanXRQChr04g0103361 Helianthus annuus HOM05D002634 ORTHO05D003100 8.0e-07 57.8 90 40.0
CANSAT25G0169 Cannabis sativa HOM05D002634 ORTHO05D003100 1.4e-06 57.0 89 36.0
FAN15G1883 Fragaria x ananassa HOM05D002634 ORTHO05D003100 1.8e-06 56.6 88 36.4
Lj4A762T8 Lonicera japonica HOM05D002634 ORTHO05D003100 1.8e-06 56.6 89 39.3
Prupe.1G428200 Prunus persica HOM05D002634 ORTHO05D003100 1.8e-06 56.6 92 38.0
QL06p040017 Quercus lobata HOM05D002634 ORTHO05D003100 1.8e-06 56.6 109 32.1
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 1.8e-06 56.6 106 34.9
CSS0024793 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 2.3e-06 56.2 39 59.0
CSS0037065 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 2.3e-06 56.2 39 59.0
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 2.3e-06 56.2 91 35.2
HanXRQChr05g0133391 Helianthus annuus HOM05D002634 ORTHO05D003100 2.3e-06 56.2 94 36.2
Hma1.2p1_0240F.1_g100120 Hydrangea macrophylla HOM05D002634 ORTHO05D003100 2.3e-06 56.2 85 36.5
Sc02g0007620 Simmondsia chinensis HOM05D002634 ORTHO05D003100 2.3e-06 56.2 89 36.0
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 3.0e-06 55.8 87 36.8
Dinv35913 Davidia involucrata HOM05D002634 ORTHO05D003100 3.0e-06 55.8 89 34.8
ECA247G2795 Erigeron canadensis HOM05D002634 ORTHO05D003100 3.0e-06 55.8 118 35.6
Lsat_1_v5_gn_1_24041 Lactuca sativa HOM05D002634 ORTHO05D003100 3.0e-06 55.8 118 33.1
QL01p022252 Quercus lobata HOM05D002634 ORTHO05D003100 3.0e-06 55.8 39 59.0
ATR0041G007 Amborella trichopoda HOM05D002634 ORTHO05D003100 4.0e-06 55.5 109 33.0
Nitab4.5_0003633g0010 Nicotiana tabacum HOM05D002634 ORTHO05D003100 4.0e-06 55.5 90 36.7
Peaxi162Scf00848g00317 Petunia axillaris HOM05D002634 ORTHO05D003100 4.0e-06 55.5 88 36.4
TAR625G1461 Trochodendron aralioides HOM05D002634 ORTHO05D003100 4.0e-06 55.5 87 35.6
Nitab4.5_0000569g0150 Nicotiana tabacum HOM05D002634 ORTHO05D003100 5.2e-06 55.1 87 35.6
vmacro21472 Vaccinium macrocarpon HOM05D002634 ORTHO05D003100 5.2e-06 55.1 85 35.3
Rhsim06G0058000 Rhododendron simsii HOM05D002634 ORTHO05D003100 6.7e-06 54.7 85 35.3
RcHm_v2.0_Chr6g0308951 Rosa chinensis HOM05D002634 ORTHO05D003100 6.7e-06 54.7 87 34.5
arahy.Tifrunner.gnm1.ann1.H8DGBI Arachis hypogaea HOM05D002634 ORTHO05D003100 8.8e-06 54.3 102 31.4
Migut.C00519 Erythranthe guttata HOM05D002634 ORTHO05D003100 8.8e-06 54.3 89 36.0
MD15G1075300 Malus domestica HOM05D002634 ORTHO05D003100 8.8e-06 54.3 91 36.3
PGSC0003DMG400042597 Solanum tuberosum HOM05D002634 ORTHO05D003100 8.8e-06 54.3 96 34.4


User provided reference genes

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