Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g056222.1 Solanum lycopersicum HOM05D000929 ORTHO05D016375 1.8e-51 205.7 107 100.0
Solyc11g066770.3 Solanum lycopersicum HOM05D000929 ORTHO05D004137 3.4e-50 201.4 107 98.1
Sopen11g026490 Solanum pennellii HOM05D000929 ORTHO05D004137 3.7e-49 198.0 107 96.3
CAN.G644.41 Capsicum annuum HOM05D000929 ORTHO05D004137 4.7e-44 181.0 107 88.8
Peaxi162Scf00789g00218 Petunia axillaris HOM05D000929 ORTHO05D004137 9.9e-42 173.3 107 87.9
Nitab4.5_0002571g0040 Nicotiana tabacum HOM05D000929 ORTHO05D004137 9.2e-40 166.8 107 84.1
Solyc10g075111.1 Solanum lycopersicum HOM05D000929 ORTHO05D017064 2.3e-38 162.2 92 92.4
Nitab4.5_0000442g0230 Nicotiana tabacum HOM05D000929 ORTHO05D004137 3.0e-38 161.8 117 77.8
TWI31G0368 Tripterygium wilfordii HOM05D000929 ORTHO05D004137 8.1e-36 153.7 108 79.6
Dinv29411 Davidia involucrata HOM05D000929 ORTHO05D004137 1.1e-35 153.3 107 77.6
HanXRQChr13g0396891 Helianthus annuus HOM05D000929 ORTHO05D004137 1.1e-35 153.3 107 77.6
Rhsim13G0104500 Rhododendron simsii HOM05D000929 ORTHO05D004137 1.1e-35 153.3 107 77.6
Actinidia24174 Actinidia chinensis HOM05D000929 ORTHO05D004137 1.4e-35 152.9 107 76.6
Peaxi162Scf00157g00039 Petunia axillaris HOM05D000929 ORTHO05D004137 1.4e-35 152.9 107 74.8
Lj3g0021930 Lotus japonicus HOM05D000929 ORTHO05D004137 1.8e-35 152.5 110 79.1
Nitab4.5_0003470g0070 Nicotiana tabacum HOM05D000929 ORTHO05D004137 3.1e-35 151.8 105 77.1
Dinv12535 Davidia involucrata HOM05D000929 ORTHO05D004137 5.2e-35 151.0 107 75.7
Actinidia03683 Actinidia chinensis HOM05D000929 ORTHO05D004137 6.9e-35 150.6 107 75.7
Solyc06g074650.3 Solanum lycopersicum HOM05D000929 ORTHO05D004137 6.9e-35 150.6 107 74.8
CAN.G919.3 Capsicum annuum HOM05D000929 ORTHO05D004137 9.0e-35 150.2 107 75.7
ECA233G5521 Erigeron canadensis HOM05D000929 ORTHO05D004137 1.2e-34 149.8 107 75.7
Nitab4.5_0004926g0020 Nicotiana tabacum HOM05D000929 ORTHO05D004137 1.2e-34 149.8 105 76.2
Actinidia07205 Actinidia chinensis HOM05D000929 ORTHO05D004137 1.5e-34 149.4 107 75.7
CSS0004620 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D004137 2.0e-34 149.1 107 74.8
Sopen06g031070 Solanum pennellii HOM05D000929 ORTHO05D004137 2.0e-34 149.1 107 74.8
Lalb_Chr24g0395091 Lupinus albus HOM05D000929 ORTHO05D004137 4.4e-34 147.9 108 75.0
Prupe.6G117500 Prunus persica HOM05D000929 ORTHO05D004137 4.4e-34 147.9 108 75.0
GSVIVG01031413001 Vitis vinifera HOM05D000929 ORTHO05D004137 7.6e-34 147.1 107 75.7
TWI79G0614 Tripterygium wilfordii HOM05D000929 ORTHO05D004137 9.9e-34 146.7 109 78.0
vmacro14382 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 1.3e-33 146.4 107 72.0
Lj1A219G36 Lonicera japonica HOM05D000929 ORTHO05D004137 1.7e-33 146.0 113 72.6
Glyma.12G180600 Glycine max HOM05D000929 ORTHO05D004137 2.2e-33 145.6 109 75.2
MD11G1155000 Malus domestica HOM05D000929 ORTHO05D004137 3.8e-33 144.8 108 74.1
Cc01_g09940 Coffea canephora HOM05D000929 ORTHO05D004137 4.9e-33 144.4 107 72.9
Glyma.13G320200 Glycine max HOM05D000929 ORTHO05D004137 4.9e-33 144.4 109 75.2
TAR633G0080 Trochodendron aralioides HOM05D000929 ORTHO05D004137 4.9e-33 144.4 108 75.0
MD03G1132700 Malus domestica HOM05D000929 ORTHO05D004137 6.4e-33 144.1 108 73.1
CiPaw.14G104400 Carya illinoinensis HOM05D000929 ORTHO05D004137 8.4e-33 143.7 108 74.1
Medtr2g084610 Medicago truncatula HOM05D000929 ORTHO05D004137 8.4e-33 143.7 113 75.2
VMungo1080G1504 Vigna mungo HOM05D000929 ORTHO05D004137 8.4e-33 143.7 110 74.5
CSS0041991 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D004137 1.1e-32 143.3 107 72.0
DCAR_018747 Daucus carota HOM05D000929 ORTHO05D004137 1.1e-32 143.3 107 72.9
Oeu010644.1 Olea europaea HOM05D000929 ORTHO05D004137 1.1e-32 143.3 108 74.1
vmacro03226 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 1.4e-32 142.9 107 73.8
vmacro23023 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 1.4e-32 142.9 107 73.8
QL01p014018 Quercus lobata HOM05D000929 ORTHO05D004137 1.9e-32 142.5 108 75.9
Migut.D02325 Erythranthe guttata HOM05D000929 ORTHO05D004137 2.4e-32 142.1 107 72.9
Migut.O00583 Erythranthe guttata HOM05D000929 ORTHO05D004137 2.4e-32 142.1 107 72.9
Lj2C996G14 Lonicera japonica HOM05D000929 ORTHO05D004137 2.4e-32 142.1 107 74.8
COL.COLO4_19274 Corchorus olitorius HOM05D000929 ORTHO05D004137 3.2e-32 141.7 111 74.8
FAN11G0593 Fragaria x ananassa HOM05D000929 ORTHO05D004137 3.2e-32 141.7 109 73.4
Hma1.2p1_0051F.1_g029810 Hydrangea macrophylla HOM05D000929 ORTHO05D004137 3.2e-32 141.7 107 72.0
Duzib150G0964 Durio zibethinus HOM05D000929 ORTHO05D004137 4.2e-32 141.4 111 75.7
Manes.11G155700 Manihot esculenta HOM05D000929 ORTHO05D004137 4.2e-32 141.4 111 73.9
CANSAT64G1824 Cannabis sativa HOM05D000929 ORTHO05D004137 5.4e-32 141.0 108 74.1
Eucgr.J00415 Eucalyptus grandis HOM05D000929 ORTHO05D004137 5.4e-32 141.0 108 75.0
Rhsim01G0209300 Rhododendron simsii HOM05D000929 ORTHO05D004137 5.4e-32 141.0 107 68.2
SGA_v2.0_scaffold27G11598 Striga asiatica HOM05D000929 ORTHO05D004137 5.4e-32 141.0 107 72.0
RcHm_v2.0_Chr5g0055751 Rosa chinensis HOM05D000929 ORTHO05D004137 7.1e-32 140.6 109 72.5
arahy.Tifrunner.gnm1.ann1.JFAW9R Arachis hypogaea HOM05D000929 ORTHO05D004137 1.6e-31 139.4 114 72.8
arahy.Tifrunner.gnm1.ann1.SC897I Arachis hypogaea HOM05D000929 ORTHO05D004137 1.6e-31 139.4 114 72.8
Ciclev10027737m.g Citrus clementina HOM05D000929 ORTHO05D004137 2.1e-31 139.0 109 75.2
FvH4_3g30090 Fragaria vesca HOM05D000929 ORTHO05D004137 2.1e-31 139.0 109 72.5
Lalb_Chr14g0374281 Lupinus albus HOM05D000929 ORTHO05D004137 2.1e-31 139.0 108 70.4
Sed0000238 Sechium edule HOM05D000929 ORTHO05D004137 2.1e-31 139.0 107 72.9
TPR.G32382 Trifolium pratense HOM05D000929 ORTHO05D004137 2.1e-31 139.0 111 73.9
ClCG02G021820 Citrullus lanatus HOM05D000929 ORTHO05D004137 4.6e-31 137.9 107 72.9
FAN16G3173 Fragaria x ananassa HOM05D000929 ORTHO05D004137 4.6e-31 137.9 109 72.5
FAN21G3154 Fragaria x ananassa HOM05D000929 ORTHO05D004137 4.6e-31 137.9 109 72.5
Psat5g254120 Pisum sativum HOM05D000929 ORTHO05D004137 4.6e-31 137.9 111 74.8
SalBow6G6633 Salvia bowleyana HOM05D000929 ORTHO05D004137 4.6e-31 137.9 107 71.0
Duzib168G0512 Durio zibethinus HOM05D000929 ORTHO05D004137 6.0e-31 137.5 111 74.8
Gorai.004G008000 Gossypium raimondii HOM05D000929 ORTHO05D004137 6.0e-31 137.5 111 71.2
Manes.04G010400 Manihot esculenta HOM05D000929 ORTHO05D004137 6.0e-31 137.5 112 73.2
Lalb_Chr22g0350571 Lupinus albus HOM05D000929 ORTHO05D004137 7.8e-31 137.1 110 70.9
PGR119G0792 Punica granatum HOM05D000929 ORTHO05D004137 7.8e-31 137.1 109 74.3
TAR636G1238 Trochodendron aralioides HOM05D000929 ORTHO05D004137 7.8e-31 137.1 108 71.3
Oeu008377.1 Olea europaea HOM05D000929 ORTHO05D004137 1.0e-30 136.7 108 71.3
Sabra04G0128300 Salix brachista HOM05D000929 ORTHO05D004137 1.0e-30 136.7 108 71.3
Potri.004G189700 Populus trichocarpa HOM05D000929 ORTHO05D004137 1.3e-30 136.3 108 70.4
CsaV3_6G014610 Cucumis sativus L. HOM05D000929 ORTHO05D004137 1.7e-30 136.0 107 72.0
Ca_01687_v3 Cicer arietinum L. HOM05D000929 ORTHO05D004137 2.3e-30 135.6 111 73.0
CiPaw.13G142000 Carya illinoinensis HOM05D000929 ORTHO05D004137 3.9e-30 134.8 108 72.2
Gohir.D08G013700 Gossypium hirsutum HOM05D000929 ORTHO05D004137 3.9e-30 134.8 111 70.3
MELO3C021463.2 Cucumis melo HOM05D000929 ORTHO05D004137 6.6e-30 134.0 107 70.1
Duzib170G1132 Durio zibethinus HOM05D000929 ORTHO05D004137 1.1e-29 133.3 108 72.2
DCAR_015485 Daucus carota HOM05D000929 ORTHO05D004137 1.5e-29 132.9 107 72.0
EL10Ac9g21056 Beta vulgaris HOM05D000929 ORTHO05D004137 1.9e-29 132.5 108 69.4
Cpa.g.sc47.59 Carica papaya HOM05D000929 ORTHO05D004137 1.9e-29 132.5 130 63.1
CDE04G0670 Ceratophyllum demersum HOM05D000929 ORTHO05D004137 1.9e-29 132.5 101 71.3
Thecc.09G293300 Theobroma cacao HOM05D000929 ORTHO05D004137 1.9e-29 132.5 111 71.2
Lsat_1_v5_gn_6_42741 Lactuca sativa HOM05D000929 ORTHO05D004137 2.5e-29 132.1 108 69.4
HanXRQChr14g0451931 Helianthus annuus HOM05D000929 ORTHO05D004137 3.3e-29 131.7 107 72.0
Potri.009G150300 Populus trichocarpa HOM05D000929 ORTHO05D004137 4.3e-29 131.3 108 68.5
Sabra09G0119000 Salix brachista HOM05D000929 ORTHO05D004137 5.6e-29 131.0 114 66.7
THA.LOC104799529 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 5.6e-29 131.0 109 72.5
Gohir.A08G003300 Gossypium hirsutum HOM05D000929 ORTHO05D004137 7.3e-29 130.6 111 69.4
arahy.Tifrunner.gnm1.ann1.F9AZ7P Arachis hypogaea HOM05D000929 ORTHO05D004137 9.6e-29 130.2 112 70.5
arahy.Tifrunner.gnm1.ann1.MS8XLG Arachis hypogaea HOM05D000929 ORTHO05D004137 9.6e-29 130.2 112 70.5
FAN25G1715 Fragaria x ananassa HOM05D000929 ORTHO05D004137 1.3e-28 129.8 113 69.0
Sc21g0004640 Simmondsia chinensis HOM05D000929 ORTHO05D004137 1.6e-28 129.4 109 68.8
Phvul.005G128200 Phaseolus vulgaris HOM05D000929 ORTHO05D004137 2.1e-28 129.0 109 70.6
THA.LOC104810893 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 2.8e-28 128.6 109 71.6
Ah.01g016700 Amaranthus hybridus HOM05D000929 ORTHO05D004137 4.8e-28 127.9 108 68.5
CDE02G4539 Ceratophyllum demersum HOM05D000929 ORTHO05D004137 4.8e-28 127.9 92 73.9
SHI06141 Sapria himalayana HOM05D000929 ORTHO05D004137 6.2e-28 127.5 107 67.3
Hund00800 Selenicereus undatus HOM05D000929 ORTHO05D004137 6.2e-28 127.5 108 67.6
A01p26810 Brassica napus HOM05D000929 ORTHO05D004137 1.1e-27 126.7 109 69.7
C01p34170 Brassica napus HOM05D000929 ORTHO05D004137 1.1e-27 126.7 109 69.7
BolC1t03387H Brassica oleracea HOM05D000929 ORTHO05D004137 1.1e-27 126.7 109 69.7
BraA01t02610Z Brassica rapa HOM05D000929 ORTHO05D004137 1.1e-27 126.7 109 69.7
PSO339G3653 Papaver somniferum HOM05D000929 ORTHO05D004137 1.8e-27 125.9 109 66.1
PSO384G2211 Papaver somniferum HOM05D000929 ORTHO05D004137 1.8e-27 125.9 109 66.1
AUR62023959 Chenopodium quinoa HOM05D000929 ORTHO05D004137 3.1e-27 125.2 108 67.6
ECA238G1224 Erigeron canadensis HOM05D000929 ORTHO05D004137 4.0e-27 124.8 107 67.3
Haze_23466 Corylus avellana HOM05D000929 ORTHO05D004137 5.3e-27 124.4 110 69.1
Gohir.A09G092000 Gossypium hirsutum HOM05D000929 ORTHO05D004137 5.3e-27 124.4 111 68.5
Carub.0006s2049 Capsella rubella HOM05D000929 ORTHO05D004137 6.9e-27 124.0 108 69.4
Thhalv10012556m.g Eutrema salsugineum HOM05D000929 ORTHO05D004137 6.9e-27 124.0 109 68.8
Gohir.D09G091900 Gossypium hirsutum HOM05D000929 ORTHO05D004137 6.9e-27 124.0 111 67.6
ATR0820G043 Amborella trichopoda HOM05D000929 ORTHO05D004137 9.0e-27 123.6 108 66.7
THA.LOC104814807 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 1.2e-26 123.2 109 68.8
AUR62031755 Chenopodium quinoa HOM05D000929 ORTHO05D004137 1.5e-26 122.9 108 66.7
Cfa010100 Carpinus fangiana HOM05D000929 ORTHO05D004137 2.0e-26 122.5 110 68.2
Nn2g13966 Nelumbo nucifera HOM05D000929 ORTHO05D004137 2.0e-26 122.5 110 67.3
Sp6g22650 Schrenkiella parvula HOM05D000929 ORTHO05D004137 2.0e-26 122.5 107 68.2
unitig_27.g25115 Utricularia gibba HOM05D000929 ORTHO05D004137 2.6e-26 122.1 97 67.0
Aqoxy2G01493 Aquilegia oxysepala HOM05D000929 ORTHO05D004137 3.4e-26 121.7 109 66.1
CARHR190820 Cardamine hirsuta HOM05D000929 ORTHO05D004137 7.6e-26 120.6 108 68.5
Gorai.006G108500 Gossypium raimondii HOM05D000929 ORTHO05D004137 7.6e-26 120.6 111 66.7
Zm00001eb000860 Zea mays HOM05D000929 ORTHO05D004137 7.6e-26 120.6 95 69.5
HPP92_028038 Vanilla planifolia HOM05D000929 ORTHO05D004137 9.9e-26 120.2 107 63.6
Aa31LG4G14280 Aethionema arabicum HOM05D000929 ORTHO05D004137 1.3e-25 119.8 109 67.0
AT5G22770 Arabidopsis thaliana HOM05D000929 ORTHO05D004137 1.3e-25 119.8 108 66.7
Zm00001eb404080 Zea mays HOM05D000929 ORTHO05D004137 1.7e-25 119.4 90 71.1
BraA10t43900Z Brassica rapa HOM05D000929 ORTHO05D004137 2.9e-25 118.6 108 65.7
BolC9t58261H Brassica oleracea HOM05D000929 ORTHO05D004137 4.9e-25 117.9 108 65.7
Carub.0006s2048 Capsella rubella HOM05D000929 ORTHO05D004137 4.9e-25 117.9 106 66.0
Aa31LG1G12920 Aethionema arabicum HOM05D000929 ORTHO05D004137 6.4e-25 117.5 108 64.8
AT5G22780 Arabidopsis thaliana HOM05D000929 ORTHO05D004137 6.4e-25 117.5 108 65.7
AL6G33770 Arabidopsis lyrata HOM05D000929 ORTHO05D004137 8.4e-25 117.1 108 66.7
A10p18250 Brassica napus HOM05D000929 ORTHO05D004137 8.4e-25 117.1 106 65.1
AL6G33800 Arabidopsis lyrata HOM05D000929 ORTHO05D004137 1.1e-24 116.7 108 65.7
SGA_v2.0_scaffold193G40716 Striga asiatica HOM05D000929 ORTHO05D004137 1.1e-24 116.7 108 64.8
C09p53880 Brassica napus HOM05D000929 ORTHO05D004137 1.4e-24 116.3 107 66.4
Sed0008575 Sechium edule HOM05D000929 ORTHO05D004137 2.4e-24 115.5 77 79.2
CARHR151250 Cardamine hirsuta HOM05D000929 ORTHO05D004137 1.2e-23 113.2 91 71.4
SEGI_29219 Sequoiadendron giganteum HOM05D000929 ORTHO05D004137 7.9e-23 110.5 107 58.9
Sp5g15820 Schrenkiella parvula HOM05D000929 ORTHO05D004137 8.7e-22 107.1 108 63.0
Mapoly0072s0011 Marchantia polymorpha HOM05D000929 ORTHO05D004137 2.4e-19 99.0 69 73.9
AagrBONN_evm.TU.Sc2ySwM_344.3846 Anthoceros agrestis HOM05D000929 ORTHO05D004137 6.9e-19 97.4 84 60.7
SMO353G0315 Selaginella moellendorffii HOM05D000929 ORTHO05D004137 1.5e-18 96.3 78 61.5
Pp3c17_6470 Physcomitrium patens HOM05D000929 ORTHO05D004137 1.3e-17 93.2 95 56.8
Psat0ss4737g0120 Pisum sativum HOM05D000929 ORTHO05D016375 4.9e-17 91.3 91 65.9
Pp3c1_29560 Physcomitrium patens HOM05D000929 ORTHO05D004137 1.1e-16 90.1 75 62.7
HPP92_027615 Vanilla planifolia HOM05D000929 ORTHO05D004137 7.1e-16 87.4 56 76.8
Pp3c17_2250 Physcomitrium patens HOM05D000929 ORTHO05D004137 1.6e-15 86.3 96 49.0
vmacro02549 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 6.7e-14 80.9 60 73.3
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 9.6e-13 77.0 64 65.6
AL6G47720 Arabidopsis lyrata HOM05D000929 ORTHO05D004137 1.3e-12 76.6 98 53.1
CBR_g29503 Chara braunii HOM05D000929 ORTHO05D004137 2.1e-12 75.9 84 52.4
SEGI_27155 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 4.8e-12 74.7 88 51.1
SEGI_30759 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 8.2e-12 73.9 88 51.1
SEGI_30997 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 8.2e-12 73.9 88 51.1
SEGI_11417 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 6.9e-11 70.9 69 55.1
SEGI_06409 Sequoiadendron giganteum HOM05D000929 ORTHO05D384726 8.4e-09 63.9 80 50.0
COL.COLO4_18716 Corchorus olitorius HOM05D000929 ORTHO05D004137 1.6e-07 59.7 74 50.0
BcaC09g49654 Brassica carinata HOM05D000929 ORTHO05D004137 2.7e-07 58.9 107 43.9
SEGI_27215 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 7.9e-07 57.4 69 52.2
Psat1g032200 Pisum sativum HOM05D000929 ORTHO05D016375 1.8e-06 56.2 52 63.5


User provided reference genes

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