Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 3.1e-142 508.4 257 100.0
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 5.0e-140 501.1 257 98.4
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 3.6e-122 441.8 226 97.8
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 2.6e-112 409.1 243 87.2
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 3.4e-112 408.7 228 89.0
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.8e-110 402.9 251 83.7
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 2.1e-98 362.8 232 82.3
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 6.6e-92 341.3 231 76.2
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 8.6e-92 340.9 236 74.6
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 5.6e-91 338.2 233 74.7
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.2e-90 337.0 238 72.7
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 2.1e-90 336.3 231 74.5
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 2.3e-89 332.8 244 71.7
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.0e-89 332.0 236 72.9
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 5.2e-89 331.6 235 73.2
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 5.2e-89 331.6 257 69.3
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 5.2e-89 331.6 197 82.2
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 5.2e-89 331.6 231 75.8
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 6.8e-89 331.3 244 71.3
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 8.9e-89 330.9 230 74.3
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 1.2e-88 330.5 184 85.9
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 2.0e-88 329.7 246 69.5
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 2.0e-88 329.7 231 76.2
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 2.6e-88 329.3 240 71.2
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 5.8e-88 328.2 247 68.4
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 7.5e-88 327.8 239 70.3
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 7.5e-88 327.8 203 78.3
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.7e-87 326.6 198 82.3
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 1.7e-87 326.6 230 73.0
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 1.7e-87 326.6 236 71.6
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 2.2e-87 326.2 233 73.0
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 2.2e-87 326.2 237 70.5
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 2.2e-87 326.2 195 82.6
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.9e-87 325.9 234 72.6
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.9e-87 325.9 232 72.4
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 2.9e-87 325.9 235 73.6
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 3.7e-87 325.5 235 73.2
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 4.9e-87 325.1 236 69.5
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 8.3e-87 324.3 240 70.4
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.4e-86 323.6 166 91.6
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.4e-86 323.6 236 70.3
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 1.9e-86 323.2 228 74.1
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 2.4e-86 322.8 227 72.2
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 3.2e-86 322.4 174 89.1
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 3.2e-86 322.4 242 69.8
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 3.2e-86 322.4 228 71.5
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 4.1e-86 322.0 188 83.5
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.4e-86 321.6 181 85.6
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 5.4e-86 321.6 181 85.6
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 5.4e-86 321.6 247 67.2
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.4e-86 321.6 181 86.7
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 7.0e-86 321.2 234 71.4
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 7.0e-86 321.2 238 71.8
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 9.2e-86 320.9 191 81.7
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 1.2e-85 320.5 242 70.2
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 1.2e-85 320.5 195 79.0
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.2e-85 320.5 185 83.2
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.6e-85 320.1 239 72.4
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 1.6e-85 320.1 237 72.6
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.6e-85 320.1 241 69.3
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 2.0e-85 319.7 227 74.0
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 2.0e-85 319.7 222 75.2
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.7e-85 319.3 182 84.6
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 2.7e-85 319.3 188 83.0
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 3.5e-85 318.9 244 68.4
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 4.6e-85 318.5 242 69.4
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 4.6e-85 318.5 245 68.2
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 7.8e-85 317.8 230 72.6
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 7.8e-85 317.8 196 79.1
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 1.0e-84 317.4 249 69.5
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 1.0e-84 317.4 227 72.7
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 1.0e-84 317.4 216 75.9
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 1.0e-84 317.4 227 71.4
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 1.7e-84 316.6 242 69.8
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 2.3e-84 316.2 227 73.1
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 2.3e-84 316.2 242 69.4
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 2.3e-84 316.2 216 75.5
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 2.3e-84 316.2 239 69.9
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 3.0e-84 315.8 239 69.9
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 3.0e-84 315.8 227 72.7
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 3.0e-84 315.8 242 69.0
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 3.9e-84 315.5 232 71.6
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 3.9e-84 315.5 240 69.2
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 5.0e-84 315.1 226 71.7
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 5.0e-84 315.1 235 70.6
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 8.6e-84 314.3 221 71.0
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.5e-83 313.5 177 85.9
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.9e-83 313.2 185 81.1
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 2.5e-83 312.8 187 81.3
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 4.3e-83 312.0 228 71.5
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 4.3e-83 312.0 228 71.5
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 5.6e-83 311.6 229 70.3
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 7.3e-83 311.2 227 71.4
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 7.3e-83 311.2 234 68.8
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 1.2e-82 310.5 236 69.9
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 1.2e-82 310.5 201 75.1
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.6e-82 310.1 226 70.4
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 2.8e-82 309.3 218 72.5
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 3.6e-82 308.9 178 83.7
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.1e-81 307.4 216 71.3
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 2.3e-81 306.2 234 66.7
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 3.1e-81 305.8 186 78.5
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 4.0e-81 305.4 173 83.8
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 9.8e-80 300.8 219 70.8
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.3e-79 300.4 223 69.1
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 4.9e-79 298.5 239 66.1
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 4.9e-79 298.5 180 80.0
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 3.3e-75 285.8 186 73.1
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 4.3e-75 285.4 233 64.8
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 5.6e-75 285.0 144 91.0
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 2.1e-74 283.1 277 59.2
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 3.2e-70 269.2 152 84.2
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.1e-69 266.5 244 60.7
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 2.7e-69 266.2 174 71.8
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 1.0e-68 264.2 238 63.0
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.5e-67 260.4 235 61.7
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 4.3e-67 258.8 180 66.7
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.6e-66 255.8 202 64.9
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 2.2e-63 246.5 166 68.7
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 7.8e-61 238.0 209 62.7
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 1.5e-56 223.8 122 87.7
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 2.5e-51 206.5 161 67.7
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.7e-47 193.7 160 64.4
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 7.1e-46 188.3 161 60.9
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.9e-43 180.3 112 79.5
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 4.3e-43 179.1 150 65.3
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 8.2e-42 174.9 149 64.4
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 6.9e-41 171.8 149 61.7
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 3.4e-40 169.5 104 79.8
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 4.5e-40 169.1 104 78.8
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.0e-32 143.7 78 91.0
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.3e-31 141.0 106 67.0
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 6.5e-31 138.7 78 87.2
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 4.2e-30 136.0 124 58.1
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 3.6e-29 132.9 75 89.3
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 4.6e-29 132.5 147 40.8
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 9.7e-27 124.8 71 88.7
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.5e-22 110.2 77 75.3
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 3.7e-18 96.3 68 67.6
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 4.1e-17 92.8 92 57.6
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.9e-15 86.7 49 79.6
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 2.2e-10 70.5 109 45.9
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.4e-09 67.0 42 73.8
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 5.3e-09 65.9 47 63.8
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.3e-07 61.2 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.3e-07 61.2 28 89.3


User provided reference genes

Program Settings