Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g069080.4 Solanum lycopersicum HOM05D000207 ORTHO05D004956 5.7e-52 207.2 98 100.0
Nitab4.5_0001379g0120 Nicotiana tabacum HOM05D000207 ORTHO05D004956 1.0e-45 186.4 88 98.9
Nitab4.5_0003038g0050 Nicotiana tabacum HOM05D000207 ORTHO05D004956 1.0e-45 186.4 88 98.9
Sopen04g004070 Solanum pennellii HOM05D000207 ORTHO05D004956 1.0e-45 186.4 88 98.9
PGSC0003DMG400025301 Solanum tuberosum HOM05D000207 ORTHO05D004956 1.0e-45 186.4 88 98.9
A04p07690 Brassica napus HOM05D000207 ORTHO05D000606 1.3e-45 186.0 91 94.5
C04p41370 Brassica napus HOM05D000207 ORTHO05D000606 1.3e-45 186.0 91 94.5
Sopen08g022730 Solanum pennellii HOM05D000207 ORTHO05D004956 1.8e-45 185.7 88 97.7
BcaB02g08614 Brassica carinata HOM05D000207 ORTHO05D000606 2.3e-45 185.3 88 96.6
BolC7t41906H Brassica oleracea HOM05D000207 ORTHO05D004956 2.3e-45 185.3 88 96.6
BraA07t28708Z Brassica rapa HOM05D000207 ORTHO05D004956 2.3e-45 185.3 88 96.6
Solyc04g008890.3 Solanum lycopersicum HOM05D000207 ORTHO05D004956 2.3e-45 185.3 88 97.7
BcaC06g35508 Brassica carinata HOM05D000207 ORTHO05D004956 3.9e-45 184.5 88 96.6
A07p09140 Brassica napus HOM05D000207 ORTHO05D004956 3.9e-45 184.5 88 96.6
C07p14090 Brassica napus HOM05D000207 ORTHO05D004956 3.9e-45 184.5 88 96.6
Thhalv10021852m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 3.9e-45 184.5 88 96.6
Hund03049 Selenicereus undatus HOM05D000207 ORTHO05D004956 3.9e-45 184.5 88 97.7
THA.LOC104808632 Tarenaya hassleriana HOM05D000207 ORTHO05D004956 3.9e-45 184.5 88 96.6
BolC4t25716H Brassica oleracea HOM05D000207 ORTHO05D004956 5.1e-45 184.1 88 95.5
ClCG01G024000 Citrullus lanatus HOM05D000207 ORTHO05D004956 5.1e-45 184.1 88 97.7
Duzib043G0002 Durio zibethinus HOM05D000207 ORTHO05D004956 5.1e-45 184.1 88 96.6
Duzib160G0169 Durio zibethinus HOM05D000207 ORTHO05D004956 5.1e-45 184.1 88 96.6
Cc03_g05640 Coffea canephora HOM05D000207 ORTHO05D004956 6.7e-45 183.7 88 95.5
Duzib235G1015 Durio zibethinus HOM05D000207 ORTHO05D004956 6.7e-45 183.7 88 95.5
Gohir.A05G111600 Gossypium hirsutum HOM05D000207 ORTHO05D004956 6.7e-45 183.7 88 95.5
Gohir.D05G112000 Gossypium hirsutum HOM05D000207 ORTHO05D004956 6.7e-45 183.7 88 95.5
Gorai.009G116200 Gossypium raimondii HOM05D000207 ORTHO05D004956 6.7e-45 183.7 88 95.5
BcaC02g09324 Brassica carinata HOM05D000207 ORTHO05D004956 8.7e-45 183.3 88 95.5
CANSAT54G2786 Cannabis sativa HOM05D000207 ORTHO05D004956 8.7e-45 183.3 88 96.6
CARHR099290 Cardamine hirsuta HOM05D000207 ORTHO05D004956 8.7e-45 183.3 88 95.5
Thhalv10026688m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 8.7e-45 183.3 88 95.5
Potri.008G168000 Populus trichocarpa HOM05D000207 ORTHO05D004956 8.7e-45 183.3 88 95.5
Sp3g20990 Schrenkiella parvula HOM05D000207 ORTHO05D004956 8.7e-45 183.3 88 95.5
GSVIVG01027834001 Vitis vinifera HOM05D000207 ORTHO05D004956 8.7e-45 183.3 88 96.6
PGR031G0434 Punica granatum HOM05D000207 ORTHO05D004956 1.1e-44 183.0 88 96.6
TWI53G1374 Tripterygium wilfordii HOM05D000207 ORTHO05D004956 1.1e-44 183.0 88 96.6
Atru.chr4.2043 Acer truncatum HOM05D000207 ORTHO05D004956 1.5e-44 182.6 88 95.5
Atru.chr4.2046 Acer truncatum HOM05D000207 ORTHO05D004956 1.5e-44 182.6 88 95.5
MELO3C007190.2 Cucumis melo HOM05D000207 ORTHO05D004956 1.5e-44 182.6 88 95.5
HanXRQChr03g0091521 Helianthus annuus HOM05D000207 ORTHO05D004956 1.5e-44 182.6 88 95.5
HanXRQChr13g0421281 Helianthus annuus HOM05D000207 ORTHO05D004956 1.5e-44 182.6 88 95.5
Manes.15G041801 Manihot esculenta HOM05D000207 ORTHO05D004956 1.5e-44 182.6 88 95.5
Potri.010G070500 Populus trichocarpa HOM05D000207 ORTHO05D004956 1.5e-44 182.6 88 95.5
Hund11897 Selenicereus undatus HOM05D000207 ORTHO05D004956 1.5e-44 182.6 88 96.6
CANSAT78G1427 Cannabis sativa HOM05D000207 ORTHO05D004956 1.9e-44 182.2 88 95.5
Ciclev10013219m.g Citrus clementina HOM05D000207 ORTHO05D004956 1.9e-44 182.2 88 95.5
Sp7g12410 Schrenkiella parvula HOM05D000207 ORTHO05D004956 1.9e-44 182.2 88 94.3
Thecc.06G005500 Theobroma cacao HOM05D000207 ORTHO05D004956 1.9e-44 182.2 88 94.3
TAR365G0659 Trochodendron aralioides HOM05D000207 ORTHO05D004956 1.9e-44 182.2 88 95.5
unitig_748.g7329 Utricularia gibba HOM05D000207 ORTHO05D000606 1.9e-44 182.2 90 92.2
Aqoxy1G01024 Aquilegia oxysepala HOM05D000207 ORTHO05D004956 2.5e-44 181.8 88 95.5
AL7G41900 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 2.5e-44 181.8 88 94.3
CSS0020261 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004956 2.5e-44 181.8 88 96.6
Carub.0003s2357 Capsella rubella HOM05D000207 ORTHO05D004956 2.5e-44 181.8 88 94.3
AUR62026315 Chenopodium quinoa HOM05D000207 ORTHO05D004956 2.5e-44 181.8 86 97.7
AUR62026510 Chenopodium quinoa HOM05D000207 ORTHO05D004956 2.5e-44 181.8 86 97.7
Sed0003648 Sechium edule HOM05D000207 ORTHO05D004956 2.5e-44 181.8 88 95.5
Sed0023527 Sechium edule HOM05D000207 ORTHO05D004956 2.5e-44 181.8 88 95.5
PGSC0003DMG400026872 Solanum tuberosum HOM05D000207 ORTHO05D004956 2.5e-44 181.8 89 97.8
Sc25g0003710 Simmondsia chinensis HOM05D000207 ORTHO05D004956 3.3e-44 181.4 86 96.5
MSTRG.21917 Avicennia marina HOM05D000207 ORTHO05D004956 4.3e-44 181.0 88 94.3
MELO3C006416.2 Cucumis melo HOM05D000207 ORTHO05D004956 4.3e-44 181.0 88 95.5
CsaV3_3G012020 Cucumis sativus L. HOM05D000207 ORTHO05D004956 4.3e-44 181.0 88 95.5
Migut.N00279 Erythranthe guttata HOM05D000207 ORTHO05D004956 4.3e-44 181.0 88 94.3
Eucgr.E04319 Eucalyptus grandis HOM05D000207 ORTHO05D004956 4.3e-44 181.0 88 94.3
Nn1g06872 Nelumbo nucifera HOM05D000207 ORTHO05D004956 4.3e-44 181.0 88 94.3
Lsat_1_v5_gn_3_117461 Lactuca sativa HOM05D000207 ORTHO05D004956 5.7e-44 180.6 88 94.3
Actinidia39908 Actinidia chinensis HOM05D000207 ORTHO05D004956 7.4e-44 180.3 88 95.5
AL3G37970 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 7.4e-44 180.3 88 93.2
AT3G23325 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 7.4e-44 180.3 88 93.2
AT4G14342 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 7.4e-44 180.3 88 93.2
COL.COLO4_26870 Corchorus olitorius HOM05D000207 ORTHO05D004956 7.4e-44 180.3 88 92.0
CsaV3_6G051140 Cucumis sativus L. HOM05D000207 ORTHO05D004956 7.4e-44 180.3 86 96.5
Os08g0444100 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 7.4e-44 180.3 88 93.2
PSO170G5684 Papaver somniferum HOM05D000207 ORTHO05D004956 7.4e-44 180.3 88 94.3
PSO198G0064 Papaver somniferum HOM05D000207 ORTHO05D004956 7.4e-44 180.3 88 94.3
PSO210G1216 Papaver somniferum HOM05D000207 ORTHO05D004956 7.4e-44 180.3 88 94.3
Ciclev10006856m.g Citrus clementina HOM05D000207 ORTHO05D004956 9.7e-44 179.9 88 94.3
ECA232G2626 Erigeron canadensis HOM05D000207 ORTHO05D004956 9.7e-44 179.9 88 93.2
ECA240G3918 Erigeron canadensis HOM05D000207 ORTHO05D004956 9.7e-44 179.9 88 93.2
Os08g0278966 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 9.7e-44 179.9 88 93.2
CDE06G2823 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 1.3e-43 179.5 88 94.3
ClCG05G004290 Citrullus lanatus HOM05D000207 ORTHO05D004956 1.3e-43 179.5 88 94.3
Hma1.2p1_0992F.1_g245270 Hydrangea macrophylla HOM05D000207 ORTHO05D004956 1.3e-43 179.5 87 94.3
DCAR_024259 Daucus carota HOM05D000207 ORTHO05D004956 1.6e-43 179.1 88 93.2
Dinv27061 Davidia involucrata HOM05D000207 ORTHO05D004956 1.6e-43 179.1 88 94.3
MD03G1200200 Malus domestica HOM05D000207 ORTHO05D004956 1.6e-43 179.1 88 93.2
Lsat_1_v5_gn_6_103061 Lactuca sativa HOM05D000207 ORTHO05D004956 2.8e-43 178.3 86 95.3
PSO210G6748 Papaver somniferum HOM05D000207 ORTHO05D004956 2.8e-43 178.3 88 92.0
Prupe.4G214000 Prunus persica HOM05D000207 ORTHO05D004956 2.8e-43 178.3 88 93.2
HPP92_005049 Vanilla planifolia HOM05D000207 ORTHO05D004956 3.7e-43 177.9 86 95.3
Migut.G00508 Erythranthe guttata HOM05D000207 ORTHO05D004956 4.8e-43 177.6 88 92.0
Mapoly0001s0403 Marchantia polymorpha HOM05D000207 ORTHO05D004956 6.3e-43 177.2 88 92.0
CiPaw.02G111100 Carya illinoinensis HOM05D000207 ORTHO05D004956 8.2e-43 176.8 88 93.2
FAN25G2312 Fragaria x ananassa HOM05D000207 ORTHO05D004956 8.2e-43 176.8 88 92.0
Lalb_Chr02g0158811 Lupinus albus HOM05D000207 ORTHO05D004956 8.2e-43 176.8 88 89.8
MD11G1217300 Malus domestica HOM05D000207 ORTHO05D004956 8.2e-43 176.8 88 90.9
Glyma.18G132700 Glycine max HOM05D000207 ORTHO05D004956 1.1e-42 176.4 88 90.9
Lj3g0015983 Lotus japonicus HOM05D000207 ORTHO05D004956 1.1e-42 176.4 88 90.9
RcHm_v2.0_Chr5g0039761 Rosa chinensis HOM05D000207 ORTHO05D004956 1.1e-42 176.4 88 92.0
Phvul.003G055200 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 1.4e-42 176.0 88 90.9
Actinidia11350 Actinidia chinensis HOM05D000207 ORTHO05D004956 2.4e-42 175.3 88 93.2
FvH4_3g22750 Fragaria vesca HOM05D000207 ORTHO05D004956 2.4e-42 175.3 88 90.9
FvH4_7g05750 Fragaria vesca HOM05D000207 ORTHO05D004956 2.4e-42 175.3 88 90.9
FAN16G2624 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.4e-42 175.3 88 90.9
Ca_08207_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004956 3.1e-42 174.9 88 88.6
Dinv36552 Davidia involucrata HOM05D000207 ORTHO05D004956 3.1e-42 174.9 86 95.3
Psat4g126040 Pisum sativum HOM05D000207 ORTHO05D004956 3.1e-42 174.9 88 88.6
Psat6g018880 Pisum sativum HOM05D000207 ORTHO05D004956 3.1e-42 174.9 88 88.6
Glyma.08G291500 Glycine max HOM05D000207 ORTHO05D004956 5.3e-42 174.1 86 91.9
AagrBONN_evm.TU.Sc2ySwM_344.2015 Anthoceros agrestis HOM05D000207 ORTHO05D004956 9.0e-42 173.3 88 89.8
FAN16G2286 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.2e-41 172.9 88 89.8
Medtr8g062750 Medicago truncatula HOM05D000207 ORTHO05D004956 2.0e-41 172.2 88 86.4
CBR_g8906 Chara braunii HOM05D000207 ORTHO05D004956 2.6e-41 171.8 88 88.6
SMO232G0034 Selaginella moellendorffii HOM05D000207 ORTHO05D004956 3.4e-41 171.4 87 88.5
Medtr3g019300 Medicago truncatula HOM05D000207 ORTHO05D004956 5.9e-41 170.6 88 86.4
Medtr3g019310 Medicago truncatula HOM05D000207 ORTHO05D004956 5.9e-41 170.6 88 86.4
FAN14G2395 Fragaria x ananassa HOM05D000709 ORTHO05D004956 7.7e-41 170.2 88 87.5
FAN05G5047 Fragaria x ananassa HOM05D000709 ORTHO05D004956 5.0e-40 167.5 88 86.4
FAN09G1394 Fragaria x ananassa HOM05D000709 ORTHO05D004956 5.0e-40 167.5 88 86.4
MBI07_g16899_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 6.5e-40 167.2 108 75.9
vmacro15450 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.5e-39 165.2 109 76.1
FAN01G2221 Fragaria x ananassa HOM05D000207 ORTHO05D004956 3.2e-39 164.9 104 76.9
FAN02G2410 Fragaria x ananassa HOM05D000709 ORTHO05D004956 1.6e-38 162.5 88 84.1
MCO09G487 Micromonas commoda HOM05D000207 ORTHO05D004956 8.8e-37 156.8 86 82.6
Phvul.009G163800 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 1.1e-36 156.4 76 92.1
BraA04t16461Z Brassica rapa HOM05D000207 ORTHO05D000606 2.2e-35 152.1 76 92.1
PGSC0003DMG400029581 Solanum tuberosum HOM05D000207 ORTHO05D004956 4.8e-35 151.0 72 97.2
SalBow3G2895 Salvia bowleyana HOM05D000207 ORTHO05D004956 6.3e-35 150.6 76 92.1
Sabra10G0036900 Salix brachista HOM05D000207 ORTHO05D004956 8.2e-35 150.2 80 86.2
EL10Ac3g04993 Beta vulgaris HOM05D000001 ORTHO05D000003 1.1e-34 149.8 72 97.2
vmacro21393 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 1.1e-34 149.8 76 92.1
Zm00001eb176950 Zea mays HOM05D000207 ORTHO05D004956 1.1e-34 149.8 72 95.8
vmacro21388 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 1.4e-34 149.4 78 88.5
Oeu005091.1 Olea europaea HOM05D000207 ORTHO05D004956 1.8e-34 149.1 72 94.4
Sabra08G0128000 Salix brachista HOM05D000207 ORTHO05D004956 2.4e-34 148.7 72 94.4
Aa31LG9G3040 Aethionema arabicum HOM05D001185 ORTHO05D002551 3.1e-34 148.3 72 94.4
Cpa.g.c34811.1 Carica papaya HOM05D000207 ORTHO05D004956 3.1e-34 148.3 72 94.4
QL06p018332 Quercus lobata HOM05D000207 ORTHO05D004956 3.1e-34 148.3 72 95.8
arahy.Tifrunner.gnm1.ann1.Q94Q39 Arachis hypogaea HOM05D000677 ORTHO05D000727 4.1e-34 147.9 77 88.3
VMungo1127G0964 Vigna mungo HOM05D000207 ORTHO05D004956 4.1e-34 147.9 76 88.2
HPP92_005064 Vanilla planifolia HOM05D000207 ORTHO05D004956 6.9e-34 147.1 72 94.4
FAN06G2225 Fragaria x ananassa HOM05D000207 ORTHO05D004956 9.1e-34 146.7 83 83.1
CiPaw.01G183100 Carya illinoinensis HOM05D000207 ORTHO05D004956 1.2e-33 146.4 72 94.4
Cre14.g627900 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D004956 1.2e-33 146.4 83 75.9
arahy.Tifrunner.gnm1.ann1.AU04TH Arachis hypogaea HOM05D000207 ORTHO05D004956 1.5e-33 146.0 72 93.1
arahy.Tifrunner.gnm1.ann1.DCT04E Arachis hypogaea HOM05D000207 ORTHO05D004956 1.5e-33 146.0 72 93.1
RcHm_v2.0_Chr7g0179491 Rosa chinensis HOM05D000207 ORTHO05D004956 2.6e-33 145.2 80 82.5
Cfa022948 Carpinus fangiana HOM05D000411 ORTHO05D004956 4.5e-33 144.4 71 94.4
FAN10G1241 Fragaria x ananassa HOM05D000207 ORTHO05D004956 4.5e-33 144.4 77 88.3
PSO063G3293 Papaver somniferum HOM05D000207 ORTHO05D004956 4.5e-33 144.4 72 91.7
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 5.9e-33 144.1 70 94.3
FAN03G1535 Fragaria x ananassa HOM05D000207 ORTHO05D004956 5.9e-33 144.1 71 93.0
PRCOL_00006150 Prasinoderma coloniale HOM05D000207 ORTHO05D004956 2.2e-32 142.1 88 70.5
arahy.Tifrunner.gnm1.ann1.6C1XPZ Arachis hypogaea HOM05D000207 ORTHO05D004956 1.1e-31 139.8 70 91.4
unitig_32.g11701 Utricularia gibba HOM05D000207 ORTHO05D004956 2.1e-30 135.6 97 71.1
MBI16_g42515_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 1.8e-29 132.5 80 80.0
CAN.G274.30 Capsicum annuum HOM05D000207 ORTHO05D004956 9.7e-28 126.7 61 95.1
MD12G1011100 Malus domestica HOM05D000207 ORTHO05D004956 1.4e-26 122.9 81 75.3
vmacro12999 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 3.1e-26 121.7 64 90.6
CDE02G4280 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 9.1e-26 120.2 57 94.7
A06p07840 Brassica napus HOM05D000207 ORTHO05D004956 1.5e-25 119.4 59 91.5
Lj4g0019776 Lotus japonicus HOM05D000207 ORTHO05D004956 7.7e-25 117.1 88 67.0
VMungo0251G1197 Vigna mungo HOM05D000207 ORTHO05D004956 1.5e-23 112.8 55 90.9
AagrBONN_evm.TU.Sc2ySwM_369.181 Anthoceros agrestis HOM05D000207 ORTHO05D004956 7.2e-23 110.5 57 82.5
Lj4g0025571 Lotus japonicus HOM05D000207 ORTHO05D004956 1.0e-21 106.7 78 67.9
Pp3c25_1640 Physcomitrium patens HOM05D000207 ORTHO05D004956 2.3e-21 105.5 56 78.6
Gohir.1Z049411 Gossypium hirsutum HOM05D000207 ORTHO05D004956 8.2e-19 97.1 47 93.6
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 3.5e-17 91.7 46 87.0
A09p67600 Brassica napus HOM05D000207 ORTHO05D004956 2.2e-16 89.0 41 95.1
Eucgr.L00218 Eucalyptus grandis HOM05D000207 ORTHO05D004956 3.2e-15 85.1 47 83.0
AagrBONN_evm.TU.Sc2ySwM_344.4872 Anthoceros agrestis HOM05D000170 ORTHO05D000159 9.8e-12 73.6 38 86.8
vmacro16885 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.8e-11 72.0 39 87.2
Peaxi162Scf00681g00334 Petunia axillaris HOM05D000207 ORTHO05D004956 2.7e-09 65.5 31 96.8
Ah.14g081440 Amaranthus hybridus HOM05D000207 ORTHO05D004956 2.2e-08 62.4 36 77.8
MBI13_g27727_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 3.8e-08 61.6 31 90.3
Zm00001eb114180 Zea mays HOM05D000207 ORTHO05D004956 3.8e-08 61.6 38 76.3


User provided reference genes

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