Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.9e-93 345.9 179 100.0
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.6e-68 261.5 191 80.6
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 4.6e-68 261.5 191 80.6
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.6e-68 261.5 191 80.6
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 8.7e-67 257.3 191 79.1
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 4.3e-66 255.0 191 78.5
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.3e-65 253.4 191 77.5
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.1e-65 252.7 192 78.1
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 6.9e-64 247.7 192 76.0
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.5e-63 246.5 191 77.5
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 1.1e-61 240.4 191 72.8
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.4e-61 240.0 191 73.3
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 2.5e-61 239.2 191 72.8
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 4.2e-61 238.4 191 71.2
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 9.3e-61 237.3 191 73.3
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 1.2e-60 236.9 191 71.2
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 1.2e-60 236.9 191 72.3
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 2.1e-60 236.1 192 72.4
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 2.7e-60 235.7 192 72.9
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 4.6e-60 235.0 192 72.4
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 7.9e-60 234.2 191 70.2
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 7.9e-60 234.2 191 70.2
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 7.9e-60 234.2 191 70.2
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 1.3e-59 233.4 191 70.2
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.8e-59 233.0 191 70.2
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.8e-59 233.0 191 70.2
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.0e-59 232.3 191 71.2
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.0e-59 232.3 191 71.2
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 3.0e-59 232.3 191 71.2
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 3.0e-59 232.3 191 70.7
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 3.0e-59 232.3 191 70.7
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 3.9e-59 231.9 191 70.7
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.1e-59 231.5 191 70.2
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 5.1e-59 231.5 192 70.3
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 6.7e-59 231.1 192 71.4
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 6.7e-59 231.1 191 70.7
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 6.7e-59 231.1 192 71.4
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 8.7e-59 230.7 192 70.3
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 8.7e-59 230.7 192 70.3
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.1e-58 230.3 192 70.3
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.1e-58 230.3 191 69.6
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.5e-58 229.9 192 70.3
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.5e-58 229.9 191 71.2
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 1.9e-58 229.6 191 69.6
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.9e-58 229.6 191 69.1
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 2.5e-58 229.2 192 69.8
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.5e-58 229.2 191 69.1
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 3.3e-58 228.8 191 69.1
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 3.3e-58 228.8 191 69.1
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 3.3e-58 228.8 191 70.2
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 3.3e-58 228.8 191 69.6
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 3.3e-58 228.8 191 69.6
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 4.3e-58 228.4 191 70.2
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 4.3e-58 228.4 191 70.2
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 4.3e-58 228.4 192 70.8
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 7.4e-58 227.6 191 68.6
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 7.4e-58 227.6 191 70.7
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 7.4e-58 227.6 192 69.3
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 9.6e-58 227.3 191 67.5
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 9.6e-58 227.3 191 69.6
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 1.3e-57 226.9 191 68.6
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 1.6e-57 226.5 191 69.1
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.6e-57 226.5 172 73.8
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 2.1e-57 226.1 191 68.1
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 2.8e-57 225.7 192 69.3
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 2.8e-57 225.7 192 69.3
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.8e-57 225.7 191 68.1
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 2.8e-57 225.7 191 68.1
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 3.7e-57 225.3 192 68.8
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 3.7e-57 225.3 191 68.1
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 4.8e-57 224.9 188 68.1
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.8e-57 224.9 191 68.6
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.8e-57 224.9 191 68.6
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 4.8e-57 224.9 192 69.3
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 6.2e-57 224.6 191 69.1
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 6.2e-57 224.6 191 67.5
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 8.2e-57 224.2 191 68.1
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 8.2e-57 224.2 191 68.1
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.1e-56 223.8 191 66.5
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 1.8e-56 223.0 191 67.5
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 2.4e-56 222.6 192 67.7
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.4e-56 222.6 192 67.7
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.4e-56 222.6 192 67.7
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 4.0e-56 221.9 191 67.5
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 6.9e-56 221.1 192 67.2
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 9.0e-56 220.7 191 67.0
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 1.2e-55 220.3 189 68.3
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 2.0e-55 219.5 189 68.3
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 2.0e-55 219.5 189 68.3
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 2.0e-55 219.5 189 68.3
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 2.0e-55 219.5 189 68.3
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 2.0e-55 219.5 189 68.3
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 2.0e-55 219.5 189 68.3
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 3.4e-55 218.8 188 68.1
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 5.8e-55 218.0 189 68.3
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 7.6e-55 217.6 189 68.3
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 1.0e-54 217.2 191 67.5
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 1.0e-54 217.2 188 68.1
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 1.7e-54 216.5 189 67.7
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 2.2e-54 216.1 191 64.4
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 5.0e-54 214.9 191 65.4
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 5.0e-54 214.9 192 66.1
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 5.5e-53 211.5 228 58.8
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 6.1e-52 208.0 185 65.4
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 1.0e-51 207.2 192 64.1
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 6.7e-51 204.5 175 69.1
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 6.7e-51 204.5 192 63.0
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 5.3e-48 194.9 189 62.4
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 6.9e-48 194.5 193 59.6
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 3.4e-47 192.2 179 66.5
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.9e-47 191.4 191 63.4
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 5.9e-47 191.4 200 61.5
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 1.3e-46 190.3 172 67.4
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.9e-46 189.1 191 56.5
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.4e-45 186.8 186 58.1
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 2.5e-45 186.0 190 56.8
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 9.4e-45 184.1 168 66.1
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 3.0e-43 179.1 172 69.8
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 1.7e-41 173.3 191 53.9
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 6.5e-38 161.4 116 76.7
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 2.6e-34 149.4 206 48.1
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.6e-31 139.4 102 75.5
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.6e-31 139.4 94 77.7
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 5.9e-31 138.3 79 91.1
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.3e-30 137.1 148 59.5
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.9e-29 133.3 79 87.3
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 4.2e-29 132.1 95 77.9
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.2e-28 130.6 93 78.5
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 4.7e-28 128.6 199 43.2
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 2.8e-25 119.4 141 58.2
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.1e-24 117.5 121 59.5
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 8.0e-20 101.3 113 59.3
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 4.4e-18 95.5 194 36.6
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.7e-17 93.6 95 58.9
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.2e-15 87.4 103 55.3
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.2e-15 87.4 103 55.3
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 1.8e-11 73.6 182 35.7
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 7.0e-08 61.6 76 50.0
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 7.7e-07 58.2 61 54.1
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 8.6e-06 54.7 57 59.6


User provided reference genes

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