Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g066620.3 Solanum lycopersicum HOM05D001730 ORTHO05D391789 9.7e-68 260.0 129 100.0
CAN.G641.73 Capsicum annuum HOM05D001730 ORTHO05D005730 8.0e-14 80.9 113 46.9
Pp3c5_1990 Physcomitrium patens HOM05D001730 ORTHO05D005730 1.1e-13 80.5 129 41.9
Solyc10g079720.2 Solanum lycopersicum HOM05D001730 ORTHO05D005730 4.0e-13 78.6 111 45.0
Sopen10g030350 Solanum pennellii HOM05D001730 ORTHO05D005730 4.0e-13 78.6 111 45.0
PGSC0003DMG400029836 Solanum tuberosum HOM05D001730 ORTHO05D005730 4.0e-13 78.6 111 45.0
Nitab4.5_0000571g0120 Nicotiana tabacum HOM05D001730 ORTHO05D005730 6.8e-13 77.8 111 45.0
Peaxi162Scf00420g00564 Petunia axillaris HOM05D001730 ORTHO05D005730 8.9e-13 77.4 113 45.1
ATR1134G130 Amborella trichopoda HOM05D001730 ORTHO05D005730 1.5e-12 76.6 96 50.0
EL10Ac3g07205 Beta vulgaris HOM05D001730 ORTHO05D005730 2.6e-12 75.9 107 43.9
Nitab4.5_0001364g0030 Nicotiana tabacum HOM05D001730 ORTHO05D005730 2.6e-12 75.9 111 45.0
SalBow2G1785 Salvia bowleyana HOM05D001730 ORTHO05D005730 2.6e-12 75.9 113 44.2
SGA_v2.0_scaffold94G28527 Striga asiatica HOM05D001730 ORTHO05D005730 4.4e-12 75.1 113 43.4
Cc06_g18900 Coffea canephora HOM05D001730 ORTHO05D005730 7.5e-12 74.3 113 43.4
Nitab4.5_0002208g0110 Nicotiana tabacum HOM05D001730 ORTHO05D005730 7.5e-12 74.3 104 47.1
Peaxi162Scf00970g00166 Petunia axillaris HOM05D001730 ORTHO05D005730 7.5e-12 74.3 96 49.0
Sc13g0001250 Simmondsia chinensis HOM05D001730 ORTHO05D005730 7.5e-12 74.3 113 43.4
AagrBONN_evm.TU.Sc2ySwM_368.1488 Anthoceros agrestis HOM05D001730 ORTHO05D005730 9.8e-12 73.9 96 49.0
Os06g0176900 Oryza sativa ssp. japonica HOM05D001730 ORTHO05D005730 9.8e-12 73.9 96 46.9
Sed0022611 Sechium edule HOM05D001730 ORTHO05D005730 9.8e-12 73.9 113 42.5
Oeu063773.2 Olea europaea HOM05D001730 ORTHO05D005730 1.3e-11 73.6 113 42.5
SEGI_02944 Sequoiadendron giganteum HOM05D001730 ORTHO05D005730 1.3e-11 73.6 96 46.9
Mapoly0005s0149 Marchantia polymorpha HOM05D001730 ORTHO05D005730 1.7e-11 73.2 113 42.5
Prupe.7G042400 Prunus persica HOM05D001730 ORTHO05D005730 1.7e-11 73.2 96 44.8
BcaB02g07623 Brassica carinata HOM05D001730 ORTHO05D005730 2.2e-11 72.8 119 39.5
Cpa.g.sc5.210 Carica papaya HOM05D001730 ORTHO05D005730 2.2e-11 72.8 96 46.9
Migut.K00129 Erythranthe guttata HOM05D001730 ORTHO05D005730 2.2e-11 72.8 113 44.2
MD12G1093700 Malus domestica HOM05D001730 ORTHO05D005730 2.2e-11 72.8 96 44.8
RcHm_v2.0_Chr2g0125281 Rosa chinensis HOM05D001730 ORTHO05D005730 2.2e-11 72.8 96 45.8
Hund24627 Selenicereus undatus HOM05D001730 ORTHO05D005730 2.2e-11 72.8 111 41.4
GSVIVG01033607001 Vitis vinifera HOM05D001730 ORTHO05D005730 2.2e-11 72.8 113 42.5
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 2.9e-11 72.4 111 41.4
Cfa020023 Carpinus fangiana HOM05D001730 ORTHO05D005730 2.9e-11 72.4 96 46.9
Dinv05063 Davidia involucrata HOM05D001730 ORTHO05D005730 2.9e-11 72.4 96 49.0
Dinv34377 Davidia involucrata HOM05D001730 ORTHO05D005730 2.9e-11 72.4 113 42.5
Os06g0175800 Oryza sativa ssp. japonica HOM05D001730 ORTHO05D005730 2.9e-11 72.4 96 49.0
Sabra16G0044800 Salix brachista HOM05D001730 ORTHO05D005730 2.9e-11 72.4 96 44.8
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 3.7e-11 72.0 113 40.7
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 3.7e-11 72.0 113 40.7
MELO3C026534.2 Cucumis melo HOM05D001730 ORTHO05D005730 3.7e-11 72.0 113 41.6
CsaV3_6G031510 Cucumis sativus L. HOM05D001730 ORTHO05D005730 3.7e-11 72.0 113 41.6
DCAR_013636 Daucus carota HOM05D001730 ORTHO05D005730 3.7e-11 72.0 96 43.8
Migut.J01673 Erythranthe guttata HOM05D001730 ORTHO05D005730 3.7e-11 72.0 96 45.8
Manes.01G122300 Manihot esculenta HOM05D001730 ORTHO05D005730 3.7e-11 72.0 113 41.6
Aa31LG10G11970 Aethionema arabicum HOM05D001730 ORTHO05D005730 4.9e-11 71.6 113 41.6
A04p03780 Brassica napus HOM05D001730 ORTHO05D005730 4.9e-11 71.6 113 39.8
BraA04t16056Z Brassica rapa HOM05D001730 ORTHO05D005730 4.9e-11 71.6 113 39.8
AUR62030340 Chenopodium quinoa HOM05D001730 ORTHO05D005730 4.9e-11 71.6 95 45.3
Eucgr.A02261 Eucalyptus grandis HOM05D001730 ORTHO05D005730 4.9e-11 71.6 96 44.8
Lj2g0003873 Lotus japonicus HOM05D001730 ORTHO05D005730 4.9e-11 71.6 113 42.5
Psat6g070960 Pisum sativum HOM05D001730 ORTHO05D005730 4.9e-11 71.6 113 43.4
PGR031G1759 Punica granatum HOM05D001730 ORTHO05D005730 4.9e-11 71.6 96 45.8
PGR044G2076 Punica granatum HOM05D001730 ORTHO05D005730 4.9e-11 71.6 96 45.8
QL07p008853 Quercus lobata HOM05D001730 ORTHO05D005730 4.9e-11 71.6 113 42.5
HPP92_013743 Vanilla planifolia HOM05D001730 ORTHO05D005730 4.9e-11 71.6 111 41.4
CDE06G0603 Ceratophyllum demersum HOM05D001730 ORTHO05D005730 6.4e-11 71.2 113 42.5
Ciclev10020055m.g Citrus clementina HOM05D001730 ORTHO05D005730 6.4e-11 71.2 113 41.6
Duzib093G2101 Durio zibethinus HOM05D001730 ORTHO05D005730 6.4e-11 71.2 96 43.8
ECA236G4630 Erigeron canadensis HOM05D001730 ORTHO05D005730 6.4e-11 71.2 114 39.5
FvH4_3g30150 Fragaria vesca HOM05D001730 ORTHO05D005730 6.4e-11 71.2 96 44.8
FAN11G0160 Fragaria x ananassa HOM05D001730 ORTHO05D005730 6.4e-11 71.2 96 44.8
FAN16G3033 Fragaria x ananassa HOM05D001730 ORTHO05D005730 6.4e-11 71.2 96 44.8
FAN21G0837 Fragaria x ananassa HOM05D001730 ORTHO05D005730 6.4e-11 71.2 96 44.8
Potri.016G038200 Populus trichocarpa HOM05D001730 ORTHO05D005730 6.4e-11 71.2 113 40.7
Sabra16G0040100 Salix brachista HOM05D001730 ORTHO05D005730 6.4e-11 71.2 113 40.7
TWI77G0683 Tripterygium wilfordii HOM05D001730 ORTHO05D005730 6.4e-11 71.2 96 45.8
AL5G38530 Arabidopsis lyrata HOM05D001730 ORTHO05D005730 8.3e-11 70.9 113 40.7
AT3G57050 Arabidopsis thaliana HOM05D001730 ORTHO05D005730 8.3e-11 70.9 113 40.7
Carub.0005s2385 Capsella rubella HOM05D001730 ORTHO05D005730 8.3e-11 70.9 113 40.7
CiPaw.09G046100 Carya illinoinensis HOM05D001730 ORTHO05D005730 8.3e-11 70.9 96 44.8
Sp5g05530 Schrenkiella parvula HOM05D001730 ORTHO05D005730 8.3e-11 70.9 113 40.7
Zm00001eb375190 Zea mays HOM05D001730 ORTHO05D005730 8.3e-11 70.9 96 46.9
AUR62040828 Chenopodium quinoa HOM05D001730 ORTHO05D005730 1.1e-10 70.5 88 46.6
Thhalv10005955m.g Eutrema salsugineum HOM05D001730 ORTHO05D005730 1.1e-10 70.5 113 40.7
Glyma.19G132000 Glycine max HOM05D001730 ORTHO05D005730 1.1e-10 70.5 113 40.7
Lalb_Chr20g0110151 Lupinus albus HOM05D001730 ORTHO05D005730 1.1e-10 70.5 113 41.6
MBI16_g23860_MAGBIO Magnolia biondii HOM05D001730 ORTHO05D005730 1.1e-10 70.5 96 46.9
THA.LOC104824410 Tarenaya hassleriana HOM05D001730 ORTHO05D005730 1.1e-10 70.5 105 42.9
Atru.chr1.1491 Acer truncatum HOM05D001730 ORTHO05D005730 1.4e-10 70.1 106 42.5
A09p49970 Brassica napus HOM05D001730 ORTHO05D005730 1.4e-10 70.1 113 39.8
C08p32380 Brassica napus HOM05D001730 ORTHO05D005730 1.4e-10 70.1 113 39.8
BolC8t50852H Brassica oleracea HOM05D001730 ORTHO05D005730 1.4e-10 70.1 113 39.8
BraA09t40447Z Brassica rapa HOM05D001730 ORTHO05D005730 1.4e-10 70.1 113 39.8
Glyma.03G129700 Glycine max HOM05D001730 ORTHO05D005730 1.4e-10 70.1 96 43.8
HanXRQChr06g0176921 Helianthus annuus HOM05D001730 ORTHO05D005730 1.4e-10 70.1 111 40.5
Lsat_1_v5_gn_8_82641 Lactuca sativa HOM05D001730 ORTHO05D005730 1.4e-10 70.1 96 43.8
Phvul.001G125400 Phaseolus vulgaris HOM05D001730 ORTHO05D005730 1.4e-10 70.1 113 40.7
QL07p008834 Quercus lobata HOM05D001730 ORTHO05D005730 1.4e-10 70.1 96 44.8
TAR623G1659 Trochodendron aralioides HOM05D001730 ORTHO05D005730 1.4e-10 70.1 96 44.8
VMungo1383G2598 Vigna mungo HOM05D001730 ORTHO05D005730 1.4e-10 70.1 113 40.7
BcaB02g08332 Brassica carinata HOM05D001730 ORTHO05D005730 1.9e-10 69.7 96 44.8
CSS0010163 Camellia sinensis var. sinensis HOM05D001730 ORTHO05D005730 1.9e-10 69.7 96 44.8
CARHR167240 Cardamine hirsuta HOM05D001730 ORTHO05D005730 1.9e-10 69.7 113 39.8
CBR_g45651 Chara braunii HOM05D001730 ORTHO05D005730 1.9e-10 69.7 96 45.8
Lj1A1103T61 Lonicera japonica HOM05D001730 ORTHO05D005730 1.9e-10 69.7 113 39.8
BcaC02g09899 Brassica carinata HOM05D001730 ORTHO05D005730 2.4e-10 69.3 113 40.7
C04p35400 Brassica napus HOM05D001730 ORTHO05D005730 2.4e-10 69.3 113 40.7
BolC4t25094H Brassica oleracea HOM05D001730 ORTHO05D005730 2.4e-10 69.3 113 40.7
Gohir.A11G308100 Gossypium hirsutum HOM05D001730 ORTHO05D005730 2.4e-10 69.3 96 44.8
Lalb_Chr25g0286861 Lupinus albus HOM05D001730 ORTHO05D005730 2.4e-10 69.3 96 44.8
Nn7g36657 Nelumbo nucifera HOM05D001730 ORTHO05D005730 2.4e-10 69.3 113 40.7
CANSAT64G2870 Cannabis sativa HOM05D001730 ORTHO05D005730 3.2e-10 68.9 109 40.4
Gohir.D11G323500 Gossypium hirsutum HOM05D001730 ORTHO05D005730 3.2e-10 68.9 96 44.8
Gorai.007G353500 Gossypium raimondii HOM05D001730 ORTHO05D005730 3.2e-10 68.9 96 44.8
Nn2g14860 Nelumbo nucifera HOM05D001730 ORTHO05D005730 3.2e-10 68.9 96 44.8
Rhsim03G0041800 Rhododendron simsii HOM05D001730 ORTHO05D005730 3.2e-10 68.9 59 54.2
RhsimUnG0220800 Rhododendron simsii HOM05D001730 ORTHO05D005730 4.1e-10 68.6 106 40.6
RhsimUnG0239200 Rhododendron simsii HOM05D001730 ORTHO05D005730 4.1e-10 68.6 96 42.7
PSO017G5717 Papaver somniferum HOM05D001730 ORTHO05D005730 5.4e-10 68.2 96 46.9
Cre16.g669550 Chlamydomonas reinhardtii HOM05D001730 ORTHO05D005730 7.0e-10 67.8 93 44.1
Rhsim03G0042000 Rhododendron simsii HOM05D001730 ORTHO05D005730 9.2e-10 67.4 96 42.7
SMO358G0226 Selaginella moellendorffii HOM05D001730 ORTHO05D005730 9.2e-10 67.4 88 46.6
Nitab4.5_0002162g0100 Nicotiana tabacum HOM05D001730 ORTHO05D005730 1.2e-09 67.0 43 69.8
DCAR_020551 Daucus carota HOM05D001730 ORTHO05D005730 1.6e-09 66.6 88 42.0
PSO063G4026 Papaver somniferum HOM05D001730 ORTHO05D005730 1.6e-09 66.6 96 45.8
PSO170G6374 Papaver somniferum HOM05D001730 ORTHO05D005730 1.6e-09 66.6 96 45.8
PSO832G4537 Papaver somniferum HOM05D001730 ORTHO05D005730 1.6e-09 66.6 96 45.8
Medtr1g064320 Medicago truncatula HOM05D001730 ORTHO05D005730 2.0e-09 66.2 113 41.6
Thecc.05G138900 Theobroma cacao HOM05D001730 ORTHO05D005730 2.0e-09 66.2 113 39.8
BcaC07g40051 Brassica carinata HOM05D001730 ORTHO05D005730 2.7e-09 65.9 35 77.1
ClCG08G009380 Citrullus lanatus HOM05D001730 ORTHO05D005730 2.7e-09 65.9 43 65.1
MD00G1088500 Malus domestica HOM05D001730 ORTHO05D005730 6.0e-09 64.7 107 40.2
HanXRQChr01g0009311 Helianthus annuus HOM05D001730 ORTHO05D005730 7.8e-09 64.3 34 76.5
MSTRG.7398 Avicennia marina HOM05D001730 ORTHO05D005730 1.0e-08 63.9 96 43.8
Manes.09G007000 Manihot esculenta HOM05D001730 ORTHO05D005730 1.3e-08 63.5 113 38.1
BcaC07g40082 Brassica carinata HOM05D001730 ORTHO05D005730 2.3e-08 62.8 40 67.5
PGSC0003DMG400035945 Solanum tuberosum HOM05D001730 ORTHO05D005730 3.9e-08 62.0 113 38.9
Aqoxy2G00352 Aquilegia oxysepala HOM05D001730 ORTHO05D005730 1.5e-07 60.1 96 41.7
PSO063G6072 Papaver somniferum HOM05D001730 ORTHO05D005730 1.5e-07 60.1 96 42.7
MCO10G385 Micromonas commoda HOM05D001730 ORTHO05D005730 1.2e-06 57.0 42 61.9
PRCOL_00006688 Prasinoderma coloniale HOM05D001730 ORTHO05D005730 2.8e-06 55.8 35 62.9


User provided reference genes

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