Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 0.0e+00 1143.6 588 100.0
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 0.0e+00 1130.5 588 98.5
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 4.0e-294 1014.2 596 89.1
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.2e-284 981.9 587 86.7
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.9e-272 942.2 588 84.2
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 3.3e-256 888.3 591 80.4
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 1.0e-228 797.0 601 71.2
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 2.2e-228 795.8 578 74.0
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 4.2e-227 791.6 580 72.2
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 4.7e-226 788.1 616 71.1
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 6.1e-226 787.7 595 72.3
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 6.1e-226 787.7 595 72.3
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.4e-225 786.6 599 71.3
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 6.7e-225 784.3 597 69.2
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 6.7e-225 784.3 591 69.9
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 4.4e-224 781.6 602 70.8
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 4.8e-223 778.1 509 78.8
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 1.1e-222 776.9 575 70.6
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 9.1e-222 773.9 593 70.8
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 2.6e-221 772.3 595 69.2
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 3.5e-221 771.9 589 69.9
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 3.5e-221 771.9 578 70.2
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 1.3e-220 770.0 515 75.7
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 2.9e-220 768.8 595 68.9
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.9e-220 768.8 600 67.5
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 5.0e-220 768.1 573 70.5
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.1e-219 766.9 595 68.9
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.4e-219 766.5 600 69.5
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 1.4e-219 766.5 588 69.4
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 2.5e-219 765.8 579 69.9
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 7.2e-219 764.2 542 73.4
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 9.4e-219 763.8 539 72.0
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 1.6e-218 763.1 591 67.5
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 3.6e-218 761.9 537 72.1
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 4.7e-218 761.5 535 73.8
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.7e-218 761.5 613 66.9
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 8.0e-218 760.8 543 72.0
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 1.0e-217 760.4 594 68.4
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 1.0e-217 760.4 594 68.4
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 5.2e-217 758.1 573 70.2
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 8.8e-217 757.3 598 69.1
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.5e-216 756.5 607 67.1
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.5e-216 756.5 594 68.0
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 4.4e-216 755.0 535 72.7
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 5.7e-216 754.6 507 75.1
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 9.7e-216 753.8 499 77.4
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.3e-215 753.4 507 75.3
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.3e-215 753.4 537 72.3
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 2.2e-215 752.7 597 67.7
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 3.7e-215 751.9 581 68.8
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 4.8e-215 751.5 601 66.6
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 6.3e-215 751.1 594 69.2
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 8.2e-215 750.7 510 75.9
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.1e-214 750.4 569 69.2
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.4e-214 750.0 507 74.4
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.8e-214 749.6 567 68.8
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.4e-214 749.2 603 66.8
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 5.3e-214 748.0 588 68.0
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.6e-213 746.5 576 68.2
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 2.0e-213 746.1 507 75.3
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 2.0e-213 746.1 507 73.4
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 2.0e-213 746.1 591 67.9
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 2.0e-213 746.1 552 70.7
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.0e-212 743.8 575 68.0
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.3e-212 743.4 579 69.4
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 6.5e-212 741.1 595 66.1
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 8.5e-212 740.7 513 74.5
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 4.2e-211 738.4 523 73.4
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 5.5e-211 738.0 502 75.1
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 5.5e-211 738.0 579 67.0
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 5.5e-211 738.0 669 63.4
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 4.7e-210 734.9 606 66.7
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.4e-209 733.4 586 66.6
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.8e-209 733.0 585 67.2
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 5.2e-209 731.5 578 68.3
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.2e-208 730.3 598 67.4
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.0e-208 729.6 582 67.5
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.3e-208 728.8 599 66.1
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 5.7e-208 728.0 534 71.2
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.7e-207 726.5 503 74.6
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.1e-206 723.8 604 64.6
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 3.1e-206 722.2 598 64.7
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 4.2e-203 711.8 602 64.8
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 8.0e-202 707.6 575 65.4
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.6e-200 702.6 638 61.4
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 5.7e-200 701.4 547 68.4
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 2.3e-196 689.5 584 64.0
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 4.2e-195 685.3 460 77.8
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.8e-193 679.9 645 60.9
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.1e-190 670.6 585 61.5
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 4.1e-190 668.7 519 67.4
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 5.4e-190 668.3 598 63.0
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 2.4e-182 642.9 502 67.9
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.7e-181 639.4 514 64.2
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.5e-181 639.0 458 71.4
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 2.5e-179 632.9 596 57.7
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.4e-177 627.1 653 54.8
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-176 624.0 513 63.2
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 4.4e-176 622.1 593 58.0
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 4.9e-175 618.6 575 58.4
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.7e-167 593.6 387 79.8
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.0e-164 584.3 481 66.3
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 3.9e-164 582.4 558 59.0
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 7.8e-157 558.1 438 64.8
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.7e-156 557.0 439 62.6
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.0e-152 543.5 522 57.3
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 3.8e-135 486.1 344 74.7
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 6.5e-135 485.3 594 49.8
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 9.6e-131 471.5 487 52.2
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.4e-129 467.6 486 51.9
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 6.5e-127 458.8 441 53.5
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 2.5e-126 456.8 422 63.3
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 2.8e-122 443.4 451 51.4
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 3.7e-122 443.0 385 65.5
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.7e-122 443.0 475 53.9
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 9.4e-118 428.3 509 51.3
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.9e-110 404.1 466 51.9
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 7.4e-107 392.1 266 76.3
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 6.5e-103 379.0 488 44.7
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.1e-89 333.2 335 54.0
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 5.5e-86 322.8 204 77.9
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 5.7e-75 286.2 228 63.2
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.5e-67 261.5 277 53.1
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.5e-67 261.5 202 61.9
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 2.9e-66 257.3 262 50.0
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 6.4e-66 256.1 173 69.9
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 1.9e-65 254.6 239 59.4
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 2.0e-64 251.1 390 39.7
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.3e-58 231.9 174 65.5
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 7.8e-56 222.6 132 81.1
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 3.3e-54 217.2 292 44.2
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-53 215.3 277 46.2
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 7.3e-46 189.5 113 83.2
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.1e-44 185.7 128 70.3
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.2e-43 182.2 177 59.3
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 2.7e-40 171.0 272 40.8
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 8.4e-34 149.4 269 36.8
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.4e-33 146.7 210 46.2
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 2.7e-32 144.4 106 67.0
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.5e-32 144.1 122 61.5
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.3e-29 135.6 112 63.4
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 9.9e-27 125.9 95 70.5
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 7.1e-25 119.8 210 38.6
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 1.0e-23 115.9 88 68.2
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 6.7e-23 113.2 268 33.2
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 6.7e-23 113.2 232 37.9
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 4.5e-19 100.5 83 55.4
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 5.8e-19 100.1 56 92.9
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.9e-18 97.8 91 54.9
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.4e-17 95.5 91 53.8
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 2.7e-16 91.3 57 84.2
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 3.0e-15 87.8 71 60.6
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.0e-15 87.8 55 81.8
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 2.1e-13 81.6 71 56.3
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.4e-11 74.3 248 27.0
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 3.8e-10 70.9 59 61.0
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 3.8e-10 70.9 109 40.4
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.5e-09 67.0 40 85.0
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.0e-07 62.8 36 80.6
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 1.5e-06 58.9 284 22.9


User provided reference genes

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