Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 8.3e-164 580.5 333 100.0
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 9.0e-142 507.3 297 98.3
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.5e-141 506.5 294 98.0
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 2.9e-132 475.7 303 90.4
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.8e-129 466.5 312 79.8
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 2.4e-126 456.1 304 87.2
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.1e-122 443.0 307 85.7
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.3e-119 433.7 307 85.7
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 2.4e-118 429.5 302 85.8
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 2.4e-118 429.5 306 83.7
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.0e-117 426.4 306 83.3
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.7e-111 406.8 299 80.9
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 8.2e-111 404.4 303 79.9
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 4.1e-110 402.1 303 78.2
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 6.9e-110 401.4 303 77.9
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.5e-109 400.2 296 80.4
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 4.5e-109 398.7 260 87.7
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 1.0e-108 397.5 299 79.3
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.0e-108 397.5 307 78.2
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 1.3e-108 397.1 299 79.9
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 1.7e-108 396.7 299 78.3
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.1e-107 394.0 299 77.9
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.4e-107 393.7 302 78.5
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 2.5e-107 392.9 302 76.5
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 3.2e-107 392.5 299 78.6
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 5.5e-107 391.7 310 76.1
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 5.5e-107 391.7 340 72.1
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 7.2e-107 391.3 309 75.4
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 7.2e-107 391.3 302 78.8
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 9.4e-107 391.0 302 76.8
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 2.7e-106 389.4 303 76.2
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 4.7e-106 388.7 295 76.9
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 1.0e-105 387.5 299 77.3
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 1.0e-105 387.5 303 78.2
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 3.0e-105 386.0 302 76.5
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 3.9e-105 385.6 297 76.8
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 5.1e-105 385.2 294 77.2
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 6.7e-105 384.8 297 75.1
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 8.8e-105 384.4 294 77.6
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 8.8e-105 384.4 303 74.3
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 8.8e-105 384.4 300 75.3
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.1e-104 384.0 302 74.8
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 1.5e-104 383.6 382 64.4
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 2.0e-104 383.3 302 75.8
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 2.0e-104 383.3 264 83.7
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 2.0e-104 383.3 302 77.8
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.3e-104 382.5 301 77.1
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 5.7e-104 381.7 301 78.1
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 7.4e-104 381.3 307 75.9
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 7.4e-104 381.3 294 76.2
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 7.4e-104 381.3 304 75.3
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.8e-103 379.4 301 77.7
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 2.8e-103 379.4 299 74.2
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 2.8e-103 379.4 297 76.8
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.8e-103 379.4 272 81.6
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 4.8e-103 378.6 297 75.8
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 1.4e-102 377.1 297 77.1
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.8e-102 376.7 297 76.4
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 2.4e-102 376.3 309 73.1
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 3.1e-102 375.9 303 75.9
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.1e-102 375.9 237 82.3
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 3.1e-102 375.9 303 75.6
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 4.1e-102 375.6 332 70.5
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 5.3e-102 375.2 300 75.7
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 7.0e-102 374.8 298 75.5
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 1.5e-101 373.6 299 73.6
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 1.5e-101 373.6 298 72.8
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 2.6e-101 372.9 305 73.4
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 3.5e-101 372.5 294 76.9
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 4.5e-101 372.1 307 74.3
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 7.7e-101 371.3 306 73.9
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 7.7e-101 371.3 300 75.0
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 2.2e-100 369.8 263 83.7
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 2.2e-100 369.8 296 74.3
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.9e-100 369.4 312 73.7
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 3.8e-100 369.0 306 74.8
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 5.0e-100 368.6 297 76.4
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 1.1e-99 367.5 264 82.6
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 3.2e-99 365.9 299 73.9
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 3.2e-99 365.9 312 72.1
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 7.2e-99 364.8 307 72.3
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 7.2e-99 364.8 307 72.3
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 7.2e-99 364.8 257 82.5
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 7.2e-99 364.8 310 72.6
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 9.4e-99 364.4 307 72.3
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 9.4e-99 364.4 294 74.8
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.2e-98 364.0 294 74.8
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 1.6e-98 363.6 299 71.2
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 2.7e-98 362.8 307 72.3
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 2.7e-98 362.8 307 72.3
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.7e-98 362.1 294 74.5
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 8.0e-98 361.3 308 71.8
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 8.0e-98 361.3 309 71.2
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 8.0e-98 361.3 297 74.1
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 8.0e-98 361.3 301 73.1
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.0e-97 360.9 298 73.2
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.4e-97 360.5 233 89.3
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.4e-97 360.5 297 68.7
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.4e-97 360.5 301 73.4
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 2.3e-97 359.8 303 72.9
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.0e-97 359.4 288 74.7
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 3.9e-97 359.0 308 71.4
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 5.2e-97 358.6 299 71.9
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 8.8e-97 357.8 304 71.4
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 8.8e-97 357.8 299 73.2
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 8.8e-97 357.8 302 72.2
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 1.1e-96 357.5 298 72.8
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.1e-96 357.5 303 72.6
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.5e-96 357.1 301 72.1
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.5e-96 357.1 303 72.3
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 2.0e-96 356.7 298 72.5
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 3.3e-96 355.9 305 73.1
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 4.4e-96 355.5 300 72.3
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 5.7e-96 355.1 300 72.3
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 7.4e-96 354.8 301 71.1
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 7.4e-96 354.8 301 71.8
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 9.7e-96 354.4 304 71.7
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 1.3e-95 354.0 298 71.8
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.7e-95 353.6 299 72.6
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 2.2e-95 353.2 298 71.8
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 3.7e-95 352.4 299 72.6
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.7e-95 352.4 302 71.2
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 1.1e-94 350.9 264 78.0
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.4e-94 350.5 257 79.4
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.8e-94 350.1 297 71.7
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.8e-94 350.1 298 71.8
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 4.1e-94 349.0 300 71.7
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 7.0e-94 348.2 300 71.7
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 7.0e-94 348.2 300 71.7
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 9.1e-94 347.8 295 72.2
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 2.0e-93 346.7 300 71.3
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 2.0e-93 346.7 300 71.3
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.6e-93 346.3 227 89.4
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 3.5e-93 345.9 298 73.2
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 4.5e-93 345.5 251 79.3
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 2.9e-92 342.8 235 87.2
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 1.1e-91 340.9 305 68.2
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 9.4e-91 337.8 303 69.6
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 4.7e-90 335.5 247 77.7
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.8e-89 333.6 302 68.5
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 3.0e-89 332.8 241 79.7
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 4.0e-89 332.4 302 70.2
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 2.2e-84 316.6 331 65.0
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 2.9e-84 316.2 255 74.1
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.0e-81 307.8 255 71.0
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 5.2e-81 305.4 205 87.8
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.3e-79 300.8 249 75.5
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 2.2e-79 300.1 307 65.8
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.7e-79 299.3 248 64.9
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.4e-78 296.6 205 83.9
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 2.9e-76 289.7 248 65.7
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.1e-75 287.7 297 61.6
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.1e-75 287.7 297 61.6
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 8.0e-74 281.6 249 74.3
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 6.8e-73 278.5 261 63.6
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 5.7e-72 275.4 230 63.9
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 9.8e-72 274.6 231 61.9
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 1.7e-71 273.9 196 82.7
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 4.9e-71 272.3 256 69.9
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 5.4e-70 268.9 236 74.2
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 2.3e-52 210.3 237 49.4
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 5.1e-52 209.1 193 73.6
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 8.6e-52 208.4 237 54.9
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 1.5e-48 197.6 121 80.2
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.8e-41 172.2 165 70.9
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.5e-40 171.0 99 83.8
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.6e-40 168.7 138 65.9
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 1.9e-38 164.1 121 72.7
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.5e-37 159.8 99 77.8
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 1.4e-33 147.9 100 78.0
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.4e-30 137.9 96 69.8
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 2.4e-30 137.1 88 75.0
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 2.1e-29 134.0 108 73.1
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 6.4e-23 112.5 91 68.1
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.0e-20 103.6 236 34.7
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 3.7e-18 96.7 170 48.8
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 5.3e-17 92.8 83 81.9
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 5.3e-17 92.8 107 65.4
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 1.2e-16 91.7 171 49.7
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 1.1e-14 85.1 122 45.9
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 2.5e-06 57.4 81 33.3
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 4.2e-06 56.6 64 46.9


User provided reference genes

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