Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 5.7e-104 380.9 197 100.0
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 1.9e-83 312.8 291 62.5
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 8.3e-79 297.4 299 60.5
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 9.6e-67 257.3 313 53.7
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.1e-66 256.1 313 54.0
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 2.1e-66 256.1 313 54.0
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 8.1e-66 254.2 170 84.7
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.5e-64 250.0 313 52.1
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.1e-62 243.8 313 52.1
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.2e-62 242.3 310 52.3
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 3.9e-60 235.3 309 50.5
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.2e-53 213.8 315 46.3
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 7.9e-53 211.1 312 45.5
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 2.3e-52 209.5 308 46.1
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.3e-50 203.8 309 44.3
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 1.3e-50 203.8 305 45.2
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.3e-50 203.8 207 62.8
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 2.1e-50 203.0 311 44.4
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.8e-50 202.6 312 44.6
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 6.2e-50 201.4 318 43.7
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 6.2e-50 201.4 312 43.6
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 8.1e-50 201.1 308 43.5
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 8.1e-50 201.1 317 44.2
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 1.1e-49 200.7 309 45.0
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.8e-49 199.9 310 44.5
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.8e-49 199.9 318 43.4
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 1.8e-49 199.9 310 44.8
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 5.3e-49 198.4 312 44.6
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 9.0e-49 197.6 309 45.0
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 9.0e-49 197.6 309 45.0
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 9.0e-49 197.6 311 42.8
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.0e-48 196.4 309 44.7
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 2.0e-48 196.4 312 43.9
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 2.6e-48 196.1 321 42.1
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 2.6e-48 196.1 319 43.3
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 3.4e-48 195.7 295 44.1
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.4e-48 195.7 311 43.7
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 3.4e-48 195.7 310 44.2
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 3.4e-48 195.7 310 44.5
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 7.6e-48 194.5 310 41.9
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 1.0e-47 194.1 310 43.9
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 1.0e-47 194.1 317 42.9
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.3e-47 193.7 312 40.7
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.3e-47 193.7 312 40.7
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.3e-47 193.7 278 48.2
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.7e-47 193.4 310 44.5
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.7e-47 193.4 310 44.2
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.7e-47 193.4 310 44.2
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 1.7e-47 193.4 305 43.3
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.2e-47 193.0 309 44.3
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 3.8e-47 192.2 312 43.3
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 4.9e-47 191.8 312 40.7
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 8.4e-47 191.0 310 43.9
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 8.4e-47 191.0 310 42.6
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 8.4e-47 191.0 307 42.7
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 1.1e-46 190.7 304 42.8
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.5e-46 189.5 312 40.7
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.5e-46 189.5 314 41.7
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.2e-46 188.7 308 44.5
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 4.2e-46 188.7 310 42.6
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 5.5e-46 188.3 304 42.4
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 7.1e-46 188.0 313 41.9
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 7.1e-46 188.0 307 42.3
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.1e-45 186.4 315 41.6
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 2.1e-45 186.4 308 42.5
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 2.1e-45 186.4 308 42.5
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 6.0e-45 184.9 313 41.5
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.8e-44 183.3 310 41.9
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.8e-44 183.3 318 40.9
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 5.1e-44 181.8 309 41.7
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 5.1e-44 181.8 314 41.1
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.7e-44 181.4 110 89.1
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 8.7e-44 181.0 300 42.7
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 8.7e-44 181.0 300 42.7
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 8.7e-44 181.0 300 42.7
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.5e-43 180.3 306 41.8
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.5e-43 180.3 306 41.8
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.5e-43 180.3 309 40.8
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.9e-43 179.9 315 41.3
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 3.3e-43 179.1 309 41.4
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 3.3e-43 179.1 350 40.6
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 5.7e-43 178.3 316 40.2
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 5.7e-43 178.3 306 40.2
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 7.4e-43 177.9 313 40.9
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 7.4e-43 177.9 316 40.5
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 7.4e-43 177.9 311 41.5
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 9.6e-43 177.6 300 42.0
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 9.6e-43 177.6 312 39.7
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 9.6e-43 177.6 316 39.6
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 1.3e-42 177.2 300 41.7
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 8.2e-42 174.5 309 41.4
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 1.4e-41 173.7 305 40.7
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 4.0e-41 172.2 315 41.0
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 5.3e-41 171.8 313 41.2
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.6e-40 169.5 348 37.6
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 2.6e-40 169.5 313 39.6
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 4.5e-40 168.7 314 40.4
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 5.8e-40 168.3 317 38.8
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 2.1e-37 159.8 335 37.9
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 5.1e-36 155.2 247 45.7
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 1.5e-35 153.7 253 43.1
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 4.3e-35 152.1 290 39.0
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.6e-34 150.2 295 36.9
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 2.8e-34 149.4 289 39.8
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.1e-33 147.5 274 40.9
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.4e-33 147.1 218 45.0
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 2.4e-33 146.4 330 37.0
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 6.9e-33 144.8 343 34.1
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 1.5e-32 143.7 297 36.7
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 7.7e-32 141.4 340 34.4
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.3e-31 140.6 79 91.1
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.2e-31 139.8 242 41.7
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 3.8e-31 139.0 80 90.0
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.1e-30 137.5 80 86.2
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.1e-30 137.5 318 33.6
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.6e-29 133.7 80 82.5
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.1e-29 133.3 274 37.2
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 6.1e-29 131.7 109 70.6
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.3e-28 129.8 80 81.2
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 7.4e-27 124.8 81 82.7
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 9.7e-27 124.4 279 35.1
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 1.3e-26 124.0 73 84.9
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 8.2e-26 121.3 78 75.6
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 2.4e-25 119.8 160 48.1
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.4e-24 115.9 246 39.0
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.8e-23 112.5 78 76.9
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 2.3e-20 103.2 250 36.4
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.0e-19 100.1 268 31.7
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 4.8e-18 95.5 139 40.3
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 6.3e-18 95.1 59 86.4
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.8e-17 93.6 118 48.3
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.5e-16 90.5 122 47.5
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 2.6e-16 89.7 139 46.0
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.7e-15 87.0 78 60.3
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 3.2e-14 82.8 253 30.8
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 8.8e-12 74.7 78 53.8
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 9.7e-11 71.2 107 37.4
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 2.2e-10 70.1 170 34.1
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 7.0e-09 65.1 72 56.9
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 7.7e-08 61.6 142 38.7
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.9e-07 59.7 41 61.0
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.9e-07 59.7 62 54.8
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 3.8e-07 59.3 62 58.1
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 8.5e-07 58.2 198 28.8
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.1e-06 57.8 56 64.3
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 1.9e-06 57.0 36 63.9


User provided reference genes

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