Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1686.4 856 100.0
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1651.0 856 97.5
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1638.6 856 96.5
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1560.4 856 91.9
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1543.9 857 91.0
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1541.6 857 90.9
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1476.5 866 86.3
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1210.7 859 70.9
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1208.0 859 70.7
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1196.4 860 70.2
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1188.3 850 69.4
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1183.7 863 70.1
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1181.0 858 69.0
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1174.8 839 70.6
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1167.5 847 68.9
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1147.9 861 67.9
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1147.1 862 67.6
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1147.1 862 67.2
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1146.7 856 67.6
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1144.8 856 67.6
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1144.4 856 67.4
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1143.3 862 67.1
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1142.9 864 66.8
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1141.7 925 64.4
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1138.3 862 67.4
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1137.9 859 66.9
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1135.6 861 66.9
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1131.7 861 66.8
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1130.5 862 67.1
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1130.5 861 66.7
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1130.5 861 66.7
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1129.0 861 66.7
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1127.9 857 65.6
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1123.2 859 67.3
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1122.1 842 67.3
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1111.7 862 65.5
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1111.3 861 65.3
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1108.6 861 66.0
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1105.5 865 65.8
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1105.5 876 64.7
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1098.2 859 65.8
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1097.4 860 65.1
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1091.3 904 63.2
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1088.2 858 65.2
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1085.9 860 63.4
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1085.1 1002 59.2
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1083.6 859 64.4
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 4.1e-311 1071.2 861 63.5
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 5.3e-311 1070.8 861 63.2
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 7.0e-311 1070.5 862 63.3
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 8.8e-311 1070.1 860 63.3
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 8.8e-311 1070.1 860 63.3
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 1.5e-310 1069.3 860 62.9
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 3.4e-310 1068.1 860 62.7
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 9.8e-310 1066.6 862 62.3
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 1.7e-309 1065.8 846 65.2
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 4.9e-309 1064.3 844 64.0
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 6.4e-309 1063.9 859 62.6
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 8.4e-309 1063.5 863 63.5
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 4.1e-308 1061.2 861 63.0
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 1.6e-307 1059.3 862 62.5
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 6.0e-307 1057.4 861 62.8
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 3.0e-306 1055.0 861 62.1
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 5.1e-306 1054.3 863 63.7
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 8.6e-306 1053.5 861 62.7
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 8.9e-303 1043.5 858 63.1
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 5.4e-300 1034.2 860 61.4
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 1.6e-299 1032.7 859 62.5
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 2.6e-294 1015.4 861 60.7
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 3.4e-294 1015.0 867 62.2
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 9.6e-289 996.9 852 60.7
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 2.1e-288 995.7 845 60.8
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 8.4e-285 983.8 847 60.8
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 1.1e-284 983.4 841 59.0
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 1.1e-284 983.4 862 61.5
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 1.9e-284 982.6 862 59.2
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 7.1e-284 980.7 847 60.3
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 1.2e-283 979.9 860 59.3
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 3.5e-283 978.4 861 59.1
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 6.0e-283 977.6 861 59.2
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 6.0e-283 977.6 848 59.8
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 2.8e-280 968.8 860 58.7
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 3.7e-280 968.4 857 59.3
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 1.1e-279 966.8 857 59.0
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 3.1e-279 965.3 857 58.5
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 4.0e-279 964.9 857 58.7
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 4.0e-279 964.9 857 58.7
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 3.8e-277 958.4 861 58.9
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 1.4e-276 956.4 861 58.4
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 1.6e-275 953.0 782 64.8
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 1.8e-274 949.5 862 58.6
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 6.7e-266 921.0 846 58.9
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 3.8e-261 905.2 850 55.8
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 5.0e-261 904.8 845 56.8
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 1.8e-255 886.3 840 55.4
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 5.0e-245 851.7 880 52.0
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 3.0e-242 842.4 866 51.4
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.2e-202 708.8 489 72.2
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 9.2e-199 698.0 860 45.1
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.9e-191 673.7 851 44.9
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 7.1e-191 671.8 832 47.4
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 3.0e-181 639.8 840 43.1
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 5.3e-178 629.0 773 46.8
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 4.0e-162 576.2 485 61.2
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 8.2e-155 552.0 840 40.7
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 2.3e-141 507.3 483 56.5
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 8.9e-101 372.5 316 58.5
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 8.9e-101 372.5 928 30.7
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 1.3e-99 368.6 327 59.6
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.8e-93 348.2 378 50.3
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 3.1e-93 347.4 291 58.8
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 3.2e-66 257.7 779 28.4
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.5e-63 248.1 229 56.8
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.3e-62 245.7 168 71.4
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 8.1e-62 243.0 309 43.4
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.4e-58 231.5 188 60.6
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 4.5e-52 210.7 184 63.6
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 7.6e-52 209.9 300 41.0
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.4e-50 204.9 148 68.2
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 3.7e-46 191.0 113 83.2
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 7.4e-31 140.2 119 58.8
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 7.4e-31 140.2 126 57.1
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 1.2e-25 122.9 638 24.8
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 1.7e-19 102.4 122 48.4
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 7.2e-18 97.1 77 64.9


User provided reference genes

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