Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 5.8e-231 803.9 416 100.0
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.1e-226 789.6 416 98.1
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 6.2e-225 783.9 416 96.9
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 9.3e-221 770.0 414 95.7
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 3.9e-219 764.6 413 95.2
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 4.5e-215 751.1 419 92.8
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 2.3e-211 738.8 423 90.1
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 1.9e-197 692.6 414 84.5
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 5.1e-195 684.5 414 83.1
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 3.3e-194 681.8 417 83.2
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 9.7e-194 680.2 413 82.8
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.2e-193 679.1 414 82.6
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 1.8e-192 676.0 414 82.1
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 3.1e-192 675.2 414 83.8
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 9.0e-192 673.7 413 81.8
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 2.0e-191 672.5 413 81.4
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 4.5e-191 671.4 411 82.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 7.7e-191 670.6 410 81.7
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.0e-190 670.2 409 82.2
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.0e-190 670.2 413 80.9
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.0e-190 670.2 413 81.1
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-190 669.5 413 81.1
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.7e-190 669.5 413 81.4
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 6.5e-190 667.5 413 81.4
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 6.5e-190 667.5 413 81.6
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.4e-189 666.4 413 80.9
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 2.5e-189 665.6 413 81.8
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.5e-189 665.6 444 77.0
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.2e-188 663.3 415 81.0
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 3.6e-188 661.8 413 79.7
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 4.6e-188 661.4 413 80.4
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 1.0e-187 660.2 413 79.9
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 1.8e-187 659.4 414 79.5
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 3.0e-187 658.7 411 80.0
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 3.0e-187 658.7 409 81.2
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 3.9e-187 658.3 414 79.7
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 5.1e-187 657.9 413 79.7
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 1.1e-186 656.8 413 78.9
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 2.5e-186 655.6 411 80.5
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 7.4e-186 654.1 413 79.2
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 7.4e-186 654.1 413 79.2
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 2.8e-185 652.1 413 78.7
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 3.7e-185 651.7 413 78.7
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 6.3e-185 651.0 412 79.4
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 8.2e-185 650.6 413 78.9
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 1.4e-184 649.8 416 78.4
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 3.1e-184 648.7 413 78.7
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 3.1e-184 648.7 413 78.7
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 4.1e-184 648.3 413 77.7
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 6.9e-184 647.5 413 78.0
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 9.1e-184 647.1 411 77.6
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.5e-183 646.4 417 78.2
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 2.0e-183 646.0 409 79.0
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 5.9e-183 644.4 413 78.7
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.3e-182 643.3 413 78.0
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 6.5e-182 641.0 413 77.5
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 6.5e-182 641.0 414 77.8
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 8.5e-182 640.6 413 77.5
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 8.5e-182 640.6 413 77.7
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 8.5e-182 640.6 413 77.5
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.5e-182 640.6 413 77.0
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.1e-181 640.2 413 76.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.4e-181 639.8 429 76.5
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.9e-181 639.4 413 78.0
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 3.2e-181 638.6 413 77.5
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.2e-181 638.6 413 76.8
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.2e-181 637.5 413 76.8
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 9.4e-181 637.1 413 77.5
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.2e-180 636.7 413 77.5
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.1e-180 636.0 413 76.8
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 7.9e-180 634.0 413 77.0
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.0e-179 633.6 413 77.0
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 3.9e-179 631.7 413 76.5
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.3e-177 626.7 414 76.6
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.7e-177 626.3 425 75.1
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.7e-177 626.3 425 75.1
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 2.8e-177 625.5 425 74.8
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 4.8e-177 624.8 413 75.5
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 2.6e-175 619.0 408 77.9
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 4.5e-175 618.2 413 74.1
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.1e-173 613.6 413 75.3
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.9e-173 612.8 410 76.1
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.5e-170 603.2 416 73.3
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 4.4e-170 601.7 437 71.4
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 7.5e-170 600.9 414 70.0
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.7e-169 599.7 413 73.4
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 8.2e-169 597.4 414 72.2
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.1e-168 597.0 370 81.6
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.1e-168 595.5 374 80.5
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 5.3e-168 594.7 414 72.2
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 5.9e-167 591.3 405 74.8
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-165 586.6 415 72.5
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.1e-160 570.5 411 68.9
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 5.0e-158 561.6 410 71.0
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 5.5e-157 558.1 411 71.0
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 7.2e-157 557.8 370 78.1
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 4.0e-155 552.0 413 69.2
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 8.8e-155 550.8 332 83.4
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 9.2e-152 540.8 402 66.4
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-148 530.0 417 66.4
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 4.1e-144 515.4 484 59.9
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 9.2e-144 514.2 399 63.7
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 6.6e-142 508.1 405 60.0
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 5.6e-141 505.0 410 65.9
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 6.8e-139 498.0 412 60.4
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 7.3e-133 478.0 303 78.2
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.4e-131 473.8 295 81.0
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.3e-131 473.0 281 82.6
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.5e-130 470.3 281 82.2
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.1e-125 454.1 257 87.2
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 2.6e-114 416.4 314 68.2
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.1e-112 411.0 256 77.7
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.9e-109 400.2 286 71.0
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-106 390.2 313 66.1
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-98 364.0 284 66.9
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 4.6e-95 352.4 301 63.8
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 1.0e-94 351.3 336 51.5
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 5.7e-85 318.9 173 94.2
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.1e-84 317.0 191 82.2
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 6.3e-84 315.5 200 82.0
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.9e-75 285.4 238 61.3
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 7.9e-71 271.9 185 74.1
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.6e-69 266.9 199 65.3
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 1.0e-62 245.0 399 35.3
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.0e-61 240.7 204 62.7
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 3.8e-57 226.5 318 37.7
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 9.4e-56 221.9 400 33.2
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.2e-55 221.5 140 77.9
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 5.2e-54 216.1 219 54.8
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 1.8e-51 207.6 121 82.6
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.8e-49 199.9 126 77.8
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.3e-44 182.6 197 56.3
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.4e-43 181.4 102 86.3
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-40 170.6 160 60.6
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.4e-37 160.2 176 55.1
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.8e-35 154.5 83 89.2
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 8.6e-33 145.6 113 64.6
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.9e-32 144.4 107 64.5
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 4.0e-30 136.7 413 28.3
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 6.8e-30 136.0 80 80.0
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.6e-26 124.8 115 59.1
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.8e-22 111.3 153 47.1
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 7.8e-18 95.9 99 54.5
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 3.3e-16 90.5 127 48.0
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.3e-16 90.1 51 78.4
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 2.8e-15 87.4 143 43.4
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 2.0e-13 81.3 146 41.8
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 3.4e-13 80.5 48 89.6
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 7.5e-13 79.3 54 77.8
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-11 75.5 55 70.9
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.2e-10 72.0 50 64.0
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 4.6e-10 70.1 62 62.9
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 8.6e-09 65.9 38 78.9
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.3e-08 63.5 71 50.7


User provided reference genes

Program Settings