Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g021360.1 Solanum lycopersicum HOM05D002634 ORTHO05D003100 4.8e-31 137.1 66 100.0
Solyc12g062700.1 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.3e-12 75.1 48 72.9
Solyc12g088620.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.0e-09 66.2 42 73.8
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.4e-09 65.9 48 66.7
Sopen12g030510 Solanum pennellii HOM05D002634 ORTHO05D003100 1.4e-09 65.9 48 66.7
Sopen05g009550 Solanum pennellii HOM05D002634 ORTHO05D003100 3.1e-09 64.7 42 73.8
PGSC0003DMG400038331 Solanum tuberosum HOM05D002634 ORTHO05D003100 1.2e-08 62.8 48 62.5
Solyc12g088570.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.5e-08 62.4 42 69.0
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 1.5e-08 62.4 42 69.0
Solyc05g014420.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.6e-08 61.6 48 62.5
Solyc05g014460.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 3.4e-08 61.2 42 69.0
Solyc04g078320.4 Solanum lycopersicum HOM05D002634 ORTHO05D003100 6.4e-07 57.0 48 56.2
Sopen04g031910 Solanum pennellii HOM05D002634 ORTHO05D003100 6.4e-07 57.0 48 56.2
Lalb_Chr09g0334001 Lupinus albus HOM05D002634 ORTHO05D003100 8.3e-07 56.6 42 54.8
MCO02G223 Micromonas commoda HOM05D002634 ORTHO05D003100 1.1e-06 56.2 48 54.2
CSS0010477 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.4e-06 55.8 48 54.2
CSS0042779 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.4e-06 55.8 48 54.2
GSVIVG01000179001 Vitis vinifera HOM05D002634 ORTHO05D003100 1.4e-06 55.8 42 59.5
Lalb_Chr16g0378751 Lupinus albus HOM05D002634 ORTHO05D003100 1.9e-06 55.5 42 57.1
Rhsim06G0058000 Rhododendron simsii HOM05D002634 ORTHO05D003100 1.9e-06 55.5 48 54.2
Hund16370 Selenicereus undatus HOM05D002634 ORTHO05D003100 1.9e-06 55.5 37 64.9
vmacro21472 Vaccinium macrocarpon HOM05D002634 ORTHO05D003100 1.9e-06 55.5 48 54.2
Zm00001eb088250 Zea mays HOM05D002634 ORTHO05D003100 1.9e-06 55.5 48 52.1
Actinidia22667 Actinidia chinensis HOM05D002634 ORTHO05D003100 2.4e-06 55.1 55 49.1
QL06p040017 Quercus lobata HOM05D002634 ORTHO05D003100 2.4e-06 55.1 37 64.9
Zm00001eb419800 Zea mays HOM05D002634 ORTHO05D003100 2.4e-06 55.1 48 52.1
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 3.2e-06 54.7 42 57.1
Migut.C00519 Erythranthe guttata HOM05D002634 ORTHO05D003100 3.2e-06 54.7 48 52.1
Sc02g0007620 Simmondsia chinensis HOM05D002634 ORTHO05D003100 3.2e-06 54.7 48 54.2
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 3.2e-06 54.7 48 52.1
Aqoxy5G01132 Aquilegia oxysepala HOM05D002634 ORTHO05D003100 4.1e-06 54.3 51 49.0
CAN.G1054.5 Capsicum annuum HOM05D002634 ORTHO05D003100 4.1e-06 54.3 48 52.1
Nitab4.5_0000934g0230 Nicotiana tabacum HOM05D002634 ORTHO05D003100 4.1e-06 54.3 48 52.1
Nitab4.5_0003633g0010 Nicotiana tabacum HOM05D002634 ORTHO05D003100 4.1e-06 54.3 48 52.1
SalBow7G2278 Salvia bowleyana HOM05D002634 ORTHO05D003100 4.1e-06 54.3 48 54.2
arahy.Tifrunner.gnm1.ann1.8C3BXP Arachis hypogaea HOM05D002634 ORTHO05D003100 5.4e-06 53.9 37 62.2
arahy.Tifrunner.gnm1.ann1.KSX8X1 Arachis hypogaea HOM05D002634 ORTHO05D003100 5.4e-06 53.9 37 62.2
Cfa004076 Carpinus fangiana HOM05D002634 ORTHO05D003100 5.4e-06 53.9 37 62.2
Ciclev10025285m.g Citrus clementina HOM05D002634 ORTHO05D003100 5.4e-06 53.9 37 62.2
Haze_15337 Corylus avellana HOM05D002634 ORTHO05D003100 5.4e-06 53.9 37 62.2
Gohir.A02G154600 Gossypium hirsutum HOM05D002634 ORTHO05D003100 5.4e-06 53.9 42 54.8
HanXRQChr05g0133391 Helianthus annuus HOM05D002634 ORTHO05D003100 5.4e-06 53.9 48 52.1
Lalb_Chr08g0245421 Lupinus albus HOM05D002634 ORTHO05D003100 5.4e-06 53.9 48 52.1
Hund05323 Selenicereus undatus HOM05D002634 ORTHO05D003100 5.4e-06 53.9 48 52.1
Thecc.01G065500 Theobroma cacao HOM05D002634 ORTHO05D003100 5.4e-06 53.9 42 54.8
Lj4A762T8 Lonicera japonica HOM05D002634 ORTHO05D003100 7.0e-06 53.5 48 52.1
Lalb_Chr16g0388841 Lupinus albus HOM05D002634 ORTHO05D003100 7.0e-06 53.5 37 59.5
Nn5g30448 Nelumbo nucifera HOM05D002634 ORTHO05D003100 7.0e-06 53.5 48 50.0
Peaxi162Scf00848g00317 Petunia axillaris HOM05D002634 ORTHO05D003100 7.0e-06 53.5 48 52.1
SGA_v2.0_scaffold102G29893 Striga asiatica HOM05D002634 ORTHO05D003100 7.0e-06 53.5 48 52.1
SGA_v2.0_scaffold214G42258 Striga asiatica HOM05D002634 ORTHO05D003100 7.0e-06 53.5 48 52.1
EL10As7g23823 Beta vulgaris HOM05D002634 ORTHO05D003100 9.2e-06 53.1 48 50.0
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 9.2e-06 53.1 48 54.2


User provided reference genes

Program Settings